New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1436017 =	14 (0.830)	4 (0.240)	3/278	2.0	21.6%	intergenic (‑47/+106)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436110 =	15 (0.890)					intergenic (‑140/+13)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase

CGGCTCCAACGTCTGACCGGTGGTTGGGTCGATGGCACGGATGGCGTCGCGGCTGCCGGTTACCGGCCTCTGGCCGATCAGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACC  >  NC_002947/1435869‑1436160                                                                                                                                                      |                                                                                                                                                cGGCTCCAACGTCTGACCGGTGGTTGGGTCGATGGCACGGATGGCGTCGCGGCTGCCGGTTACCGGCCTCTGGCCGATCAGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCAGGGGGGGGATTA‑CGAcc                                                                                                                                                >  2:266259/1‑150 (MQ=255)                    gtggtTGGGTCGATGGCACGGATGGCGTCGCGGCTGCCGGTTACCGGCCTCTGGCCGATCGGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTACTGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCAc                                                                                                                             >  1:211378/1‑150 (MQ=255)                    gtggtTGGGTCGATGGCACGGATGGCGTCGCGGCTGCCGGTTACCGGCCTCTGGCCGATCAGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCTCTGTAGGAGCGGGTTCAc                                                                                                                             <  2:20407/150‑1 (MQ=255)                                   accgacgtcctgaccgacgctcagcgcaactatgccgaacagcagtacgcgctgttccgcagctggtatgccagctggtcggccgagcaaaacatcgcctgagcagccactgctcCCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGc                                                                                                               <  2:197370‑M1/35‑1 (MQ=255)                                                       gCCGGTTACCGGCCTCTGGCCGATCAGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCgg                                                                                          <  1:26494/150‑1 (MQ=255)                                                             tACCGGCCTCTGGCCGATCCGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGcc                                                                                    <  1:266711/150‑1 (MQ=255)                                                                            gATCAGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACg                                                                     >  1:338113/1‑150 (MQ=255)                                                                                            gtgAGGGGACTGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGACCAGCAACTGCGGCACG‑CTATATTCGGCCGCGAACAGGGGCGACGCCGGTGCCATGCACTGGGTCGGCTGATTCGCGGGCACGCCCGCTCCCACAGGga                                                     <  1:95302/150‑1 (MQ=9)                                                                                             tgAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTATTACGCGGGCACGCCCGCTCCCACAGGgag                                                    <  1:383594/150‑1 (MQ=255)                                                                                             gcagctggtatgccagctggtcggccgagcaaaacatcgcctgagcagccactgctcCCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGga                                                     <  1:88251‑M1/93‑1 (MQ=255)                                                                                                    gtatgccagctggtcggccgagcaaaacatcgcctgagcagccactgctcCCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGt                                              >  2:88251‑M1/51‑150 (MQ=255)                                                                                                    gtatgccagctggtcggccgagcaaaacatcgaatgagcagccgcggctcCCCCTGTAGGAGCGGGTTCACCAGGGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGt                                              >  1:197370‑M1/51‑150 (MQ=255)                                                                                                     aTGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTgg                                            <  1:266259/150‑1 (MQ=255)                                                                                                              cctTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAgg                                   <  2:279416/150‑1 (MQ=255)                                                                                                                           aTGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTc                      >  1:366502/1‑150 (MQ=255)                                                                                                                             gCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCgg                    >  1:79623/1‑150 (MQ=255)                                                                                                                                         gggggATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTgg        <  1:295220/150‑1 (MQ=255)                                                                                                                                               ttA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATAcc  >  1:350426/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                CGGCTCCAACGTCTGACCGGTGGTTGGGTCGATGGCACGGATGGCGTCGCGGCTGCCGGTTACCGGCCTCTGGCCGATCAGCAGGTTGCCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTA‑CGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACC  >  NC_002947/1435869‑1436160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.