New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1443111 =	9 (0.530)	4 (0.290)	4/228	1.4	46.0%	intergenic (‑42/+134)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
	?	NC_002947	1443179 =	2 (0.140)					intergenic (‑110/+66)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator

CGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGT  >  NC_002947/1442970‑1443220                                                                                                                                              |                                                                                                              cGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCgg                                                                                                       <  1:148859/150‑1 (MQ=255)           ggggTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGGGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCgg                                                                                             >  1:205048/1‑149 (MQ=255)                          cgcgcatgaggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcggggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGgcg                                                                              <  2:183439‑M1/34‑1 (MQ=255)                                           tgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcggggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGc                                                             >  1:183439‑M1/100‑150 (MQ=255)                                             aGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCgg                                                           <  1:353490/150‑1 (MQ=255)                                              tgctttCGTCCATTGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGCCAACTTCTCTGCAAGGCGGGGTGGCGCTGTGTCGTTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCggg                                                          <  2:205048/146‑1 (MQ=255)                                                                                   cAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCgg                                                                                                       >  1:3945/1‑68 (MQ=255)                                                                                   cAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCgg                                                                                                       <  2:3945/68‑1 (MQ=255)                                                                                           tCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGc                                                     >  1:394430/1‑110 (MQ=255)                                                                                           tCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGc                                                     <  2:394430/110‑1 (MQ=255)                                                                                                      gggCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGTAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGt  >  1:158650/1‑150 (MQ=255)                                                                                                      aatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCggg                                                          <  1:21683‑M1/54‑1 (MQ=255)                                                                                                      aatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCggg                                                          >  2:21683‑M1/41‑94 (MQ=255)                                                                                                                                              |                                                                                                              CGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGT  >  NC_002947/1442970‑1443220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.