New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1967181 =	5 (0.300)	4 (0.240)	4/270	1.7	42.4%	intergenic (+8/+111)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967291 =	6 (0.370)					intergenic (+118/+1)	PP_1762/yciK	hypothetical protein/putative oxidoreductase

GAACCCCACCCTGGGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGA  >  NC_002947/1967032‑1967259                                                                                                                                                      |                                                                               gaACCCCACCCTGGGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGCTCCGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTc                                                                                <  1:237405/150‑1 (MQ=255)   aCCCCACCCTGGGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCt                                                                              <  1:315530/150‑1 (MQ=255)                                                agagTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGc                                 <  2:57145/150‑1 (MQ=255)                                                                gttcctgttcctGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTgc                 >  1:112784/1‑150 (MQ=255)                                                                     tgttcctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCcct            <  2:112784/150‑1 (MQ=255)                                                                            catgccggtgtacctgtacctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaaCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCtgtg     >  1:119750‑M1/75‑150 (MQ=255)                                                                             atgccggtgtacctgtacctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaaCCTGCATCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTgg    >  1:210718‑M1/74‑150 (MQ=255)                                                                                        cctgtacctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaaCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGa  >  1:47713‑M1/63‑141 (MQ=255)                                                                                        cctgtacctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaaCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGa  <  2:47713‑M1/79‑1 (MQ=255)                                                                                                                                                      |                                                                               GAACCCCACCCTGGGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGA  >  NC_002947/1967032‑1967259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.