New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2057866	14 (0.830)	5 (0.360)	5/230	1.2	35.0%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2057906	7 (0.500)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein

GATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAA  >  NC_002947/2057717‑2058014                                                                                                                                                      |                                                                                                                                                     gATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCCCCTAC                                                                                                                                                      >  2:301728‑M1/1‑150 (MQ=255)      acCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGa                                                                                                                                                 <  2:282472/150‑1 (MQ=255)          ttttGCCTGGCGTTGCGCTTGTATGGCAGCGAGCATGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTgc                                                                                                                                             <  1:308027/150‑1 (MQ=255)           tttGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTgcg                                                                                                                                            >  2:125359/1‑150 (MQ=255)            ttGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTgcgc                                                                                                                                           <  1:370166/150‑1 (MQ=255)                 tGGCGTTGAGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGc                                                                                                                                      <  1:307255/150‑1 (MQ=255)                          gcTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCACTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGggcg                                                                                                                             <  1:273324/150‑1 (MQ=255)                            ttGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGAGAACCCGCTCGGACATTGACTGCGCGATGCCTAAGggcggc                                                                                                                           >  1:68775/1‑150 (MQ=255)                                aTGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTTACTGCGCGGGCATTTCTTAGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCaa                                                                                                                       <  1:18507/150‑1 (MQ=255)                                     aGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACattgactgcgccgcccttaggcatcgcgcagtcaat                                                                                                                  <  2:372222‑M1/150‑37 (MQ=255)                                           cAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgaagtcaatgt                                                                                                            <  2:121822‑M1/150‑43 (MQ=255)                                             gggCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtag                                                                                                          >  1:125359‑M2/1‑146 (MQ=255)                                              ggCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtagg                                                                                                         <  1:139830‑M2/150‑6 (MQ=255)                                                 aTGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTGCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACACGCTCCTACATTGACTGCGAGATGCCTAAGGGCGGGGCAACCGTCGGTCggacgagg                                                                                                      <  1:67507‑M2/150‑9 (MQ=255)                                                    taggggtggtttacggGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcggg                                                                                                   <  2:395576‑M1/143‑52 (MQ=255)                                                    cAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcggg                                                                                                   >  2:276516‑M2/1‑139 (MQ=255)                                                                  gggCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAaga                                                                                     <  1:204742/150‑1 (MQ=255)                                                                       aTGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCa                                                                                <  1:72037/150‑1 (MQ=255)                                                                                                       gaGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCg                                                <  1:98603/150‑1 (MQ=255)                                                                                                        aGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCgg                                               >  1:332314/1‑150 (MQ=255)                                                                                                                         cggccgCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatc                                                                                                                         <  1:66040‑M1/59‑30 (MQ=255)                                                                                                                         cggccgCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatc                                                                                                                         >  2:66040‑M1/1‑30 (MQ=255)                                                                                                                                            cccGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctg           >  2:276516‑M1/1‑11 (MQ=255)                                                                                                                                            cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccaccccta           <  2:395576‑M2/150‑100 (MQ=255)                                                                                                                                             ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATg          >  2:202079/1‑150 (MQ=255)                                                                                                                                              cGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTACGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCTGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGa         >  2:78815/1‑150 (MQ=255)                                                                                                                                               cctcgtccgaccgacggttgccccgcccttaggcatctcgcagtcaatgtaggagcgtgttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagcaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcat        <  1:67507‑M1/143‑143 (MQ=255)                                                                                                                                                  ccTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgcc     <  1:139830‑M1/150‑146 (MQ=255)                                                                                                                                                   cTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgccc    >  1:125359‑M1/1‑4 (MQ=255)                                                                                                                                                     aCATTGACTTCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgccctg  <  2:121822‑M2/150‑109 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAA  >  NC_002947/2057717‑2058014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.