New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 24721833 (0.180)4 (0.280)
+ACCTGATTGGGGGTGGACACA		 4/236 1.5 22.8% intergenic (+44/+105) PP_2166/PP_2167 anti‑anti‑sigma factor/PhoD‑like phosphatase
?NC_002947 = 5574160 29 (1.710)intergenic (+161/+144) rsgA/motB ribosome biogenesis GTPase RsgA/flagellar motor rotation protein

ACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACC  >  NC_002947/2472063‑2472320
                                                                                                                        |                                                                                                                                         
acaAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtg                                                                                                              >  1:12617‑M1/1‑121 (MQ=255)
                     aTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAg                                                                                         <  2:55720/150‑1 (MQ=255)
                                     aGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgc                                                                         <  2:12617‑M1/150‑67 (MQ=255)
                                                               tGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgg                                                                                   <  1:225585‑M1/114‑57 (MQ=255)
                                                               tGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgg                                                                                   >  2:225585‑M1/1‑58 (MQ=255)
                                                                                                  ttCGCGGGTAAACGGGCTCCTGCGACGGTCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGACGAGGCCGGCACAGGCTGTAAACACTCTCAATCTCACTACGCCCGGTCTTTCAACGCTg            >  2:55812/1‑150 (MQ=25)
                                                                                                            aaCCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAcc  >  2:408288/1‑150 (MQ=255)
                                                                                                                        |                                                                                                                                         
ACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACC  >  NC_002947/2472063‑2472320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.