New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6009165 =	4 (0.240)	4 (0.310)	6/212	0.9	72.4%	intergenic (+6/+76)	norM/PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
	?	NC_002947	6009242 =	0 (0.000)					coding (1667/1668 nt)	PP_5263	GGDEF domain‑containing protein

ACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCA  >  NC_002947/6009181‑6009359                                                               |                                                                                                                      ACGCCCGCTCCCACAGGGACCGCGCAATCC‑TGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAg                                                                                            <  1:404903‑M1/89‑1 (MQ=255) ACGCCCGCTCCCACAGGGACCGCGCAATCC‑TGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAg                                                                                            >  2:404903‑M1/1‑89 (MQ=255)        gctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCAc                         >  2:268307‑M2/56‑150 (MQ=255)          tcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTggc                                                                                                  <  1:322586‑M2/22‑1 (MQ=255)          tcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTggc                                                                                                  >  2:322586‑M2/54‑75 (MQ=255)           CCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGacac                                                                                                              >  1:386381‑M1/1‑61 (MQ=255)           CCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGacac                                                                                                              <  2:386381‑M1/61‑1 (MQ=255)            ccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg                     >  2:175863‑M2/52‑150 (MQ=255)            CACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCAAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGACATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt                    <  1:391309‑M1/150‑1 (MQ=255)                               ctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTCGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGca  >  1:92397‑M2/33‑150 (MQ=255)                                                       agaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCgg                                                 <  1:110662‑M2/71‑1 (MQ=255)                                                       agaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCgg                                                 >  2:110662‑M2/9‑79 (MQ=255)                                                               |                                                                                                                      ACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCA  >  NC_002947/6009181‑6009359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.