New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1690813 =	15 (0.890)	4 (0.240)	4/274	1.7	21.8%	coding (60/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein
	?	NC_002947	1690835 =	14 (0.840)					coding (38/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein

GCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGCGCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAGGCAAGCAGTGAAACAATCGTTATAAGCGTAGTGCGT  >  NC_002947/1690715‑1690956                                                                                                                          |                                                                                                                          gCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGCGCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTc                                                                                              <  1:80350/150‑1 (MQ=255)   cTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGCGCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCtt                                                                                            <  2:104027/150‑1 (MQ=255)                ccGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGCGCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCTAGCAATGCGGTCTTGTGCACTGACATg                                                                               <  2:269427/150‑1 (MQ=255)                                            cgaTGTCCAGGCGCCCCTCACCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTc                                                   >  2:7649/1‑150 (MQ=255)                                             gaTGTCCAGGCGCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCg                                                  <  2:317081/150‑1 (MQ=255)                                                    caccatgtcagtgcacaagaccgcattgctcggcgccaccacctgcgccaggctggcgccggccagcatgGCGCAggt                                                                                                                    <  2:154806‑M2/8‑1 (MQ=255)                                                    caccatgtcagtgcacaagaccgcattgctcggcgccaccacctgcgccaggctggcgccggccagcatgGCGCAggt                                                                                                                    >  1:154806‑M2/71‑78 (MQ=255)                                                        gcCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGa                                       <  2:16182/150‑1 (MQ=255)                                                         ccccTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAg                                      >  2:362393/1‑150 (MQ=255)                                                                 cGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCTTAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTcc                                                                        <  2:163318/108‑1 (MQ=255)                                                                 cGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTcc                                                                        >  1:163318/1‑108 (MQ=255)                                                                        cAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTcttctt                                                                <  1:393690/109‑1 (MQ=255)                                                                        cAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTcttctt                                                                >  2:393690/1‑109 (MQ=255)                                                                                tGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACGTGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAGGCAAg                                 <  2:24596/132‑1 (MQ=255)                                                                                tGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACGTGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAGGCAAg                                 >  1:24596/1‑132 (MQ=255)                                                                                           acctgcgcCATGCTGGCCGGCG‑CCAGCCTGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGgtg                                                                            <  2:154806‑M1/70‑1 (MQ=255)                                                                                           acctgcgcCATGCTGGCCGGCG‑CCAGCCTGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGgtg                                                                            >  1:154806‑M1/9‑78 (MQ=255)                                                                                             ggcCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAGGCAAGCAGTGAAACAATCGTTATAAGCGTAGTGCGt  <  1:67527/150‑1 (MQ=255)                                                                                                    catgctggccggcgccagcatgGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAGGCAAGCAGTGa                           >  1:304003‑M2/23‑119 (MQ=255)                                                                                                    catgctggccggcgccagcatgGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAGGCAAGCAGTGa                           <  2:304003‑M2/97‑1 (MQ=255)                                                                                                                          |                                                                                                                          GCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGCGCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGC‑GCCGGCCAGCATGGCGCAGGTGGTGGCGCCGAGCAATGCGGTCTTGTGCACTGACATGGTGTTCCCTCTTCTTGGCGATCTTGTTCGGGCAGTCATGAGGCAAGCAGTGAAACAATCGTTATAAGCGTAGTGCGT  >  NC_002947/1690715‑1690956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.