| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1780127 | 7 (0.410) | 3 (0.210) | 3/240 | 1.8 | 35.2% | intergenic (+44/+62) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | = 1780151 | 5 (0.340) | intergenic (+68/+38) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
GTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCC > NC_002947/1780024‑1780275 | gtgCGGCAAGTACTGGGGGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCTCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTTTACCTGTGGGAGCGGGCGTGc < 2:24567/150‑1 (MQ=255) tCAAGGCCCTTCGCGGGCGCCCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTc < 1:41707/150‑1 (MQ=255) ccGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAgggg > 1:165099/1‑73 (MQ=255) ccGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAgggg < 2:165099/73‑1 (MQ=255) ccACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgcgc > 1:226321/1‑150 (MQ=255) cacaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacc < 1:61453‑M2/122‑90 (MQ=255) cacaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacc > 2:61453‑M2/1‑33 (MQ=255) aCTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctcatcccccaccaggt < 1:227262‑M2/150‑125 (MQ=255) | GTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCC > NC_002947/1780024‑1780275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |