New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5125135 =	8 (0.470)	3 (0.220)	3/226	1.7	25.5%	intergenic (+61/‑121)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5125214 =	11 (0.800)					intergenic (+140/‑42)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease

ACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCAT  >  NC_002947/5125070‑5125359                                                                                                                                                 |                                                                                                                                                  ccTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGcc                                                                                                                                              <  1:98859/149‑1 (MQ=255)      cagcagTCTTGCGACTGAATGTGTTTGCCTGAGGCTTTACCCTTTGCCGTTGCCGGCCCCTTCCCGGGTAAACCCGTTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAc                                                                                                                                         <  2:288709/150‑1 (MQ=38)                gCGACAGAACGTGTCTGCCCGAGGCTTTACACTTTGCCTTCGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTaga                                                                                                                               <  2:151094/150‑1 (MQ=38)                                 ccTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGAcc                                                                                                              >  1:234963/1‑150 (MQ=255)                                         tttGCAGTTTGCCTTGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCCTCTGGATTGTGGGCAAACCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGa                                                                                                      <  2:322771/150‑1 (MQ=37)                                                tttgcctttgccGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACcaccg                                                                                               <  1:404928/150‑1 (MQ=255)                                                                              cccgctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTg                                                                     >  2:90700‑M2/68‑146 (MQ=255)                                                                              cccgctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTg                                                                     <  1:90700‑M2/79‑1 (MQ=255)                                                                                CGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATtggcgcac                                                               <  2:221095‑M1/150‑3 (MQ=255)                                                                                     ctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttc                                                          >  1:221517‑M2/61‑150 (MQ=255)                                                                                                  ccGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAg                                                                                                                  >  2:188332/1‑81 (MQ=255)                                                                                                  ccGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAg                                                                                                                  <  1:188332/81‑1 (MQ=255)                                                                                                       tGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTc                                        >  2:103472/1‑150 (MQ=255)                                                                                                        gAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCaa                                                                                                                   <  1:89564/74‑1 (MQ=255)                                                                                                        gAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCaa                                                                                                                   >  2:89564/1‑74 (MQ=255)                                                                                                                              gagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAgcgc                 >  2:312625‑M2/20‑150 (MQ=255)                                                                                                                                gcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCa               >  2:324550‑M2/18‑150 (MQ=255)                                                                                                                                             cgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGatcat  <  1:195481‑M2/146‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  ACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCAT  >  NC_002947/5125070‑5125359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.