| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,505,303 | Δ1 bp | 5.7% | coding (382/1074 nt) | PP_3103 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,505,303 | 0 | C | . | 5.7% | 225.3 / 7.8 | 70 | coding (382/1074 nt) | PP_3103 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (31/35); new base . (2/2); total (33/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.42e-01 | |||||||||||
TGGTCGATCGGGTAGTGGTCGCAATGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGAGCAAGCTGGCGTGCAGCGCG > NC_002947/3505154‑3505450 | tggtCGATCGGGTAGTGGTCGCAATGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGc < 1:1524894/150‑1 (MQ=255) ggTAGTGGTCGCAATGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGa < 2:36366/150‑1 (MQ=255) gTAGTGGTCGCAATTGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAg > 1:857900/1‑150 (MQ=255) gTCGGAAGGGCTCCGGTTGCGCGTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGGGATCTCGGCCTGCA‑GCCGAGCGCTcc < 2:96526/150‑1 (MQ=255) cGCAATGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCgg < 2:615065/150‑1 (MQ=255) gCAATGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGc > 1:561175/1‑130 (MQ=255) gCAATGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGc < 2:561175/130‑1 (MQ=255) aaTGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCGGCTTGTTGTAGATCTCGGCCTGCA‑GCCGAGCGCTCCGggcg < 1:1506126/150‑1 (MQ=255) tGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGggcggc > 2:406131/1‑150 (MQ=255) cTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAAt < 2:1625063/150‑1 (MQ=255) tCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGG‑CTGCAGGCCGAgatc > 2:892614/1‑133 (MQ=255) tCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGG‑CTGCAGGCCGAgatc < 1:892614/136‑4 (MQ=255) ggTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCtt < 2:135286/150‑1 (MQ=255) ttGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCCACAGTTTCTGCTCATTCTTCGCCAACGAGGCCGCCAGCTGCCTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTc < 2:1628897/150‑1 (MQ=255) ttGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTc < 1:1446650/150‑1 (MQ=255) cACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCa > 1:1240805/1‑150 (MQ=255) gaTCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGcc > 1:576104/1‑150 (MQ=255) tCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCgg < 2:857900/150‑1 (MQ=255) cGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGc < 2:493797/150‑1 (MQ=255) gtgtGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCgg > 1:1081723/1‑113 (MQ=255) gtgtGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCgg < 2:1081723/113‑1 (MQ=255) gCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGa > 1:1413319/1‑99 (MQ=255) gCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGa < 2:1413319/99‑1 (MQ=255) gCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATc > 1:632635/1‑150 (MQ=255) gCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATc > 2:710361/1‑150 (MQ=255) gCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATc > 2:201315/1‑150 (MQ=255) ccTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCt < 1:1626566/150‑1 (MQ=255) tttGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGccc < 1:710361/150‑1 (MQ=255) ggCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGa < 2:632635/150‑1 (MQ=255) tGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGc < 1:320676/77‑1 (MQ=255) tGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGc > 2:320676/1‑77 (MQ=255) gCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTaa < 1:201315/150‑1 (MQ=255) cAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAag > 1:118512/1‑150 (MQ=255) aCTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAaggt < 1:406131/150‑1 (MQ=255) cTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAaggta < 2:576104/150‑1 (MQ=255) cTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAaggta > 1:1238828/1‑150 (MQ=255) ccAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATgg < 1:1615564/150‑1 (MQ=255) cAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGc > 1:1020897/1‑150 (MQ=255) aCAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCGCCGAGTAAGGTAGGTGACGATGGCTg > 1:5355/1‑150 (MQ=255) tttCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCaa < 1:1204088/80‑1 (MQ=255) tttCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCaa > 2:1204088/1‑80 (MQ=255) ttgcTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAg > 1:1641182/4‑150 (MQ=255) cTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTaa < 2:1240805/150‑1 (MQ=255) tGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAAc < 2:1238828/150‑1 (MQ=255) tGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAAc < 2:1298688/150‑1 (MQ=255) gCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCATTAAca > 1:504485/1‑150 (MQ=255) cTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCt > 2:334227/1‑110 (MQ=255) cTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCt < 1:334227/110‑1 (MQ=255) aTTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAAcagcag > 1:1360281/1‑150 (MQ=255) tcttcGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACg < 2:866782/128‑1 (MQ=255) tcttcGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACg > 1:866782/1‑128 (MQ=255) cttcGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGGGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCAGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCAc < 1:1570496/150‑1 (MQ=255) ttcGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTc < 2:672059/84‑1 (MQ=255) ttcGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTc > 1:672059/1‑84 (MQ=255) gCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAAc > 1:1403909/1‑150 (MQ=255) ccAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAACGTAGGTGACGATGGCTGTCAGTAACAgcagcagatcgg > 1:14845/1‑144 (MQ=255) aaCCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGc > 2:1256715/1‑150 (MQ=255) gccgccAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGggc < 1:1295194/50‑1 (MQ=255) gccgccAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGggc > 2:1295194/1‑50 (MQ=255) gccAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAag > 1:508905/1‑101 (MQ=255) gccAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAag < 2:508905/101‑1 (MQ=255) ccAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCcgc > 1:1046609/1‑150 (MQ=255) ccAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCcgc < 2:1360281/150‑1 (MQ=255) aGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGa < 1:1256715/150‑1 (MQ=255) gttgGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCATTAACAGCAGCACCATCTGCTCCTGCACGCCAGcttgctc < 2:504485/150‑7 (MQ=255) ttgGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGa < 1:487761/84‑1 (MQ=255) ttgGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGa > 2:487761/1‑84 (MQ=255) tgGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGAGCAAGCTGGc > 2:925212/1‑150 (MQ=255) tctgaTCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTGGCCATGCTGCTCATGACGCCGGCCTTCATCCGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGAGCAAGCTgcac < 1:836077/147‑4 (MQ=255) ggAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAag > 2:413633/1‑87 (MQ=255) ggAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAag < 1:413633/87‑1 (MQ=255) aTCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCCGCCCCCGAGTAAGGTAGGTGACGATGGATGTAAGTAAGCGCATCACGAACGACGCCGGCCCGCGAGCAAGCTgcaagaga > 2:836077/1‑143 (MQ=255) gctcGG‑CTGCAGGCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGAGCAAGCTGGCGt < 2:620597/145‑1 (MQ=255) gctcGG‑CTGCAGGCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGAGCAAGCTGGCGt > 1:620597/2‑146 (MQ=255) ggCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCTTCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGAGCAAGCTGGCGTGCAgcgcg > 1:288376/1‑150 (MQ=255) | TGGTCGATCGGGTAGTGGTCGCAATGGCTCCGGTTGCGCTTGTGCACGAGAGATCGGTGTGGCCTCTTTGGGCTGCAACTCCGGCTGCGCCAACAGTTTCTGCTCATTCTTCGCCAACCAGGCCGCCAGCTGCTTGTTGGAGATCTCGGCCTGCA‑GCCGAGCGCTCCGGGCGGCAATGCTTTCCATGCTGCTCATGACGCCGGCCTTCATCTGCCCCCGAGTAAGGTAGGTGACGATGGCTGTCAGTAACAGCAGCACCAACTGCTCCTGCCCGCGAGCAAGCTGGCGTGCAGCGCG > NC_002947/3505154‑3505450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |