New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	82066 =	59 (0.990)	5 (0.080) +GC	4/236	NT	9.2%	intergenic (+43/+85)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	= 86765	41 (0.680)					intergenic (‑48/+97)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein

TTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/82122‑82066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCTTCCCCGC  <  NC_002947/86765‑86670                                                          ||                                                                                                 atgCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTC                    <  1:573623/134‑1 atgCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTC                    >  2:573623/4‑137    CCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCTTCCCC    <  2:492143/150‑1       GCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCTTCCCCGC  >  1:134288/1‑149       GCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCTTCCCCGC  <  2:134288/149‑1                                                          ||                                                                                                 TTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/82122‑82066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCTTCCCCGC  <  NC_002947/86765‑86670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.