| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 258505 | 60 (1.000) | 6 (0.110) | 5/222 | NT | 9.6% | coding (39/1407 nt) | PP_0207 | nitrate ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 258519 | 58 (1.050) | coding (53/1407 nt) | PP_0207 | nitrate ABC transporter substrate‑binding protein | |||||
TCCCGCCATCCGGCGAACCACCGGACGCCCTCCTGCTGTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/258352‑258505‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcgTTCAGGCCAGTGAGCGCCAGCGCGAGGCCGGCCACGGTTGCAACAAGGCGCATGGGTGTTTCCCCTCGAATCGTTATAAGAGTTGGCTTCGTCTCCGCCGCCCGGCTTGGGTGGTGGGAAAC < NC_002947/258519‑258398 TCCCGCCATCCGGCGAACCACCGGACGCCCTCCTGCTGTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCT > 2:582771/1‑150 GGACGCCCTCCTGCTGTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGTTCAGGCCAGTGAGCGCC < 1:843402/150‑1 GACGCCCTCCTGCTGTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGTTCAGGCCAGTGAGCGCCA < 2:8109/150‑1 CCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCT < 1:881097/99‑1 CCACCACACAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCT > 2:881097/1‑99 TAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGC < 1:1260096/55‑1 TAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGC > 2:1260096/1‑55 ACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGTTCAGGCCAGTGAGCGCCAGCGCGAGGCCGGC > 1:817211/1‑77 ACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGTTCAGGCCAGTGAGCGCCAGCGCGAGGCCGGC < 2:817211/77‑1 ATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGTTCAGGCCAGTGAGCGCCA > 1:606537/1‑58 ATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGTTCAGGCCAGTGAGCGCCA < 2:606537/58‑1 GCGTTCAGGCCAGTGAGCGCCAGCGCGAGGCCGGCCACGGTTGCAACAAGGCGCATGGGTGTTTCCCCTCGAATCGTTATAAGAGTTGGCTTCGTCTCCGCCGCCCGGCTTGGGTGGTGGGAAAC > 1:704266/1‑125 GCGTTCAGGCCAGTGAGCGCCAGCGCGAGGCCGGCCACGGTTGCAACAAGGCGCATGGGTGTTTCCCCTCGAATCGTTATAAGAGTTGGCTTCGTCTCCGCCGCCCGGCTTGGGTGGTGGGAAAC < 2:704266/125‑1 TCCCGCCATCCGGCGAACCACCGGACGCCCTCCTGCTGTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/258352‑258505‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcgTTCAGGCCAGTGAGCGCCAGCGCGAGGCCGGCCACGGTTGCAACAAGGCGCATGGGTGTTTCCCCTCGAATCGTTATAAGAGTTGGCTTCGTCTCCGCCGCCCGGCTTGGGTGGTGGGAAAC < NC_002947/258519‑258398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |