| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 499220 | 67 (1.120) | 4 (0.080) | 3/192 | NT | 7.1% | intergenic (+61/‑235) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 499259 | 51 (1.060) | intergenic (+100/‑196) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
GCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/499049‑499220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGC < NC_002947/499259‑499114 GCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATG < 1:358361/150‑1 GAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCG > 1:478786/1‑150 CAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGG < 2:423239/149‑1 CAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGG > 1:423239/1‑149 GACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATG > 2:1002792/1‑150 GACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATG > 2:1625754/1‑150 GACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATG > 1:1051079/1‑150 ACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTAAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGC < 1:905027/150‑1 ccTCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCC > 2:767701/3‑150 CATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCC > 1:441260/1‑150 ATCAGCCCCCACAGCCCGGGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCG > 2:887674/1‑150 ATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATG > 1:793091/1‑132 ATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATG < 2:793091/132‑1 TCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGTGGGCCCGAAACTTGCCGAAGCCTATGTGGGAATGGGCATGCCCGC > 1:336419/1‑150 TCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTCTGTCGGAGGGGGCATGCCCGC > 2:706400/1‑150 GCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA < 2:341191/150‑1 GCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA > 2:409520/1‑150 ACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGA > 2:955843/1‑150 GAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGC < 1:955843/150‑1 GGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:409520/150‑1 GGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 2:895298/150‑1 GCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATA < 2:441260/150‑1 TGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGT < 2:1520581/150‑1 ctcttcGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTA > 2:488099/7‑150 GTGGGAGCGGGCATGCCCGCGAAGCGGCCGGCTCAGCCATAGAGATCAGCCGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGaa < 1:1550531/150‑3 TGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGC > 2:339516/1‑90 TGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGC < 1:339516/90‑1 GGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTT > 2:486126/1‑150 GGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTC < 1:1484855/116‑1 GGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTC > 2:1484855/1‑116 GAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTC < 1:1419680/150‑1 GCGGGCATTCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCAC > 2:478786/1‑150 GCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCAC < 2:1552928/150‑1 GCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAAGCGTGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCAC < 1:590166/150‑1 GGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAG > 1:624661/1‑150 CATGCCCCCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCT < 1:793807/150‑1 CCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGC < 1:388763/150‑1 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCTCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTT > 2:1506978/1‑119 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCTCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTT < 1:1506978/119‑1 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCC > 2:20050/1‑150 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCC > 1:783510/1‑150 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGAT < 2:1090584/113‑1 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGAT > 1:1090584/1‑113 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAAACACATCAGCTTGTGCTCAATGGCGTACTACACCAGATCTGCC > 1:15612/1‑150 CGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCA < 2:703281/150‑1 CGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCA > 2:1581774/1‑150 CGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGC < 2:648902/150‑1 GCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/499049‑499220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGC < NC_002947/499259‑499114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |