New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	652768 =	58 (0.970)	4 (0.070)	4/226	NT	7.5%	intergenic (‑102/+16)	dsbD‑I/ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	652811 =	44 (0.780)					coding (1935/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL

GATTCGTGACCACAGCGAGCGGATTCACGAACTGGGTGAAGACAACCTGCAGCGCATTGGCGAGGGGCGTAAACAGGGTGAACAGCTGCTGAGCCTGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/652922‑652768 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCGG  >  NC_002947/652811‑652959                                                                                                                                                                                                                                                                                                                  GATTCGTGACCACAGCGAGCGGATTCACGAACTGGGTGAAGACAACCTGCAGCGCATTGGCGAGGGGCGTAAACAGGGTGAACAGCTGCTGAGCCTGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCC                                                                                                                                                            <  1:1295244/150‑1   TTCGTCACCACAGCGAGCTGATTCACGAACTGGGTGAAGACAACCTGCAGCGCATTGGCGAGGGGCGTAAACAGGGTGAACAGCTGCTGAGCCTGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGC                                                                                                                                                          <  2:246459/150‑1    TCGTGACCACAGCGAGCGGATTCACGAACTGGGTGAAGACAACCTGCAGCGCATTGGCGAGGGGCGTAAACAGGGTGAACAGCTGCTGAGCCTGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCC                                                                                                                                                         >  2:1489228/1‑150                                        AGACAACCTGCAGCGCATTGGCGAGGGGCGTAAACAGGGTGAACAGCTGCTGAGCCTGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCGCGG                                                                                                                                                      <  1:578151/117‑1                                        AGACAACCTGCAGCGCATTGGCGAGGGGCGTAAACAGGGTGAACAGCTGCTGAGCCTGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCGCGG                                                                                                                                                      >  2:578151/1‑117                                                                                                TGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCT                                                                                         >  1:1393790/1‑122                                                                                                TGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCT                                                                                         <  2:1393790/122‑1                                                                                                          GCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCT                                                        <  1:1199487/145‑1                                                                                                          GCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCT                                                        >  2:1199487/1‑145                                                                                                                                                       GCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAACCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACA      <  1:66445/150‑1                                                                                                                                                        CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGC                                                                                          >  1:1419446/1‑65                                                                                                                                                        CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGC                                                                                          <  2:1419446/65‑1                                                                                                                                                          CGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCG   <  2:1295244/150‑1                                                                                                                                                           GGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCGG  <  1:491836/150‑1                                                                                                                                                                                                                                                                                                                  GATTCGTGACCACAGCGAGCGGATTCACGAACTGGGTGAAGACAACCTGCAGCGCATTGGCGAGGGGCGTAAACAGGGTGAACAGCTGCTGAGCCTGGGCGGTGAGCTGAACCGGGCGGTGCGAGCGTTCAGGGTCTGAGATCGAGCGCCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/652922‑652768 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCGG  >  NC_002947/652811‑652959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.