New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1196277	61 (1.020)	5 (0.090)	5/232	NT	7.7%	coding (332/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
	?	NC_002947	= 1196306	61 (1.050)					coding (361/1755 nt)	xcpQ	type II secretion pathway protein XcpQ

CCCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1196127‑1196277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCGACG  <  NC_002947/1196306‑1196158                                                                                                                                                                                                                                                                                                              CCCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCG                                                                                                                                                        >  2:984947/1‑150  CCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGC                                                                                                                                                       >  2:1559195/1‑150                                            CGACGCCGACGCCATCTACGACATCTGCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGG                                                                                                             <  1:1390819/150‑1                                                              CGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCT                                                                                                                   <  1:1408483/126‑1                                                              CGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCT                                                                                                                   >  2:1408483/1‑126                                                                                                     CACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGG                                                                                                                 <  1:462350/89‑1                                                                                                     CACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGG                                                                                                                 >  2:462350/1‑89                                                                                                                                                ctgaCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGTGTCGTGCAG         >  2:359442/5‑150                                                                                                                                                    CCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCG     >  1:382857/1‑150                                                                                                                                                       CCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCGACG  <  1:1490601/150‑1                                                                                                                                                                                                                                                                                                              CCCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1196127‑1196277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCGACG  <  NC_002947/1196306‑1196158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.