New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1273319 =	83 (1.390)	5 (0.090) +GCAGGCGA	5/224	NT	6.9%	intergenic (+104/+64)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	6052544 =	62 (1.040)					intergenic (+49/+121)	PP_5304/PP_5305	lipoprotein/epimerase/dehydratase‑like protein

GGCCGTAACGACCCGTGCCCGTGCGGTAGCGAGAAGAAGTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1273445‑1273319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCT  >  NC_002947/6052544‑6052590                                                                                                                                ||||||||                                                GGCCGTAACGACCCGTGCCCGTGCGGTAGCGAGAAGAAGTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCAC                                  <  2:469438/150‑1                                                          GCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAACACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGC   <  1:847941/124‑1                                                          GCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAACACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGC   >  2:847941/1‑124                                                              GATCGACTGACGCGATAAAAATCTGAGAGATGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCT  <  1:1407427/121‑1                                                              GATCGACTGACGCGATAAAAATCTGAGAGATGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCT  >  2:1407427/1‑121                                                                                                                                ||||||||                                                GGCCGTAACGACCCGTGCCCGTGCGGTAGCGAGAAGAAGTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1273445‑1273319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCT  >  NC_002947/6052544‑6052590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.