New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1340018	51 (0.850)	5 (0.090)	5/228	NT	8.5%	coding (583/897 nt)	PP_1164	LysR family transcriptional regulator
	?	NC_002947	= 1340032	59 (1.040)					coding (597/897 nt)	PP_1164	LysR family transcriptional regulator

GCATGCGATAATCGGCACCACCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1339993‑1340018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaccCGCACGCGGCG‑A‑CAGGTTGGTGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGCACCCTGCCCACCCGCAGCGCCTTCAACCCGGAGT  <  NC_002947/1340032‑1339884                                                                                                                                                                                   GCATGCGATAATCGGCACCACCAACCTG‑TCGCCGCG‑TGCGGGTTGGTGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGCACCCTGCCC                           >  2:1325901/1‑150    TGCGATAATCGGCACCACCAACCCGCACGCGGCG‑A‑CAGGTT                                                                                                                                     >  1:350562/1‑41    TGCGATAATCGGCACCACCAACCCGCACGCGGCG‑A‑CAGGTT                                                                                                                                     <  2:350562/41‑1       GATAATCGGCACCACCAACCTG‑TCGCCGCGTG‑CGGGTTGGCGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGC                                    >  1:583123/1‑135       GATAATCGGCACCACCAACCTG‑TCGCCGCGTG‑CGGGTTGGCGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGC                                    <  2:583123/135‑1                     CCAACCCGCACGCGGCG‑A‑CAGGTTGGTGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGCACCCTGCCCACCCGCAGCGCCTTCAACCC       >  1:433977/1‑150                         CCCGCACGCGGCG‑A‑CAGGTTGGTGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGCA                                   >  1:518181/1‑118                         CCCGCACGCGGCG‑A‑CAGGTTGGTGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGCA                                   <  2:518181/118‑1                          CCGCACGCGGCG‑A‑CAGGTTGGTGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGCACCCTGCCCACCCGCAGCGCCTTCAACCCGGAGT  >  1:287213/1‑150                                                                                                                                                                                   GCATGCGATAATCGGCACCACCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1339993‑1340018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaccCGCACGCGGCG‑A‑CAGGTTGGTGGTGCCGATTATCGCATGCCCGGCCAGGTCCGACGGGTGCTTCGGCACACCATGGCGCGCCAGGTAGTCGGGCGAGGCACACAACATGCGCCGCACCCTGCCCACCCGCAGCGCCTTCAACCCGGAGT  <  NC_002947/1340032‑1339884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.