New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1436589	69 (1.150)	4 (0.070)	4/230	NT	5.6%	coding (482/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	= 1436627	70 (1.220)					coding (444/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase

TGATGGCGCCGGTGGCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACATCGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1436443‑1436589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaCCTATTCTTCGAACTGCGCAGCCAGTTCCCCAACCTGATCGGCTTCAAGGAGTTTGGCGGTGGCGCCGACTT  <  NC_002947/1436627‑1436556                                                                                                                                                                                                                             TGATGGCGCCGGTGGCGTGGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACATCGTCATCCTTGGAGGTGATGTGCTCGGCGTCGTAGCGCAAGTCGGCGCCACCGCGAAACTCCTTGAAGCCGAgca                                                                       <  2:253353/150‑4                                   ATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACATCGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAGCGTCTTGGAAGCCGACCTATTCTTCGAACTGCGCAGCCAGTTCCCCAACCTG                                     >  2:42860/1‑150                                       ACCACCTGGGTGTCGACACCGACCATCAGGGTGACATCGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGACCTATTCTTCGAACTGCGCAGCCAGTTCCCCAACCTGATCG                                 >  2:1541745/1‑150                                              GGGTGTCGACACCGACCATCAGGGTGACATCGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGACCTATTCTTCGAACTGCGCAGCCAGTTCCCCAACCTGATCGGCTTCAA                          <  1:1541745/150‑1                                               GGTGTCGACACCGACCATCAGGGTGACATCGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGACCTATTCTTCGAACTGCGGAGCCATTTCCCCAACCTGATCGGCTTCAAG                         <  1:42860/150‑1                                                                                                                                                   ACCTATTCTTCGAACTGCGCAGCCAGTTCCCCAACCTGATCGGCTTCAAGGAGTTTGGCGGTGGCGCCGACTT  <  1:1149749/73‑1                                                                                                                                                   ACCTATTCTTCGAACTGCGCAGCCAGTTCCCCAACCTGATCGGCTTCAAGGAGTTTGGCGGTGGCGCCGACTT  >  2:1149749/1‑73                                                                                                                                                                                                                             TGATGGCGCCGGTGGCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACATCGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1436443‑1436589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaCCTATTCTTCGAACTGCGCAGCCAGTTCCCCAACCTGATCGGCTTCAAGGAGTTTGGCGGTGGCGCCGACTT  <  NC_002947/1436627‑1436556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.