New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1744332 =	55 (0.920)	3 (0.050)	3/226	NT	5.5%	coding (585/597 nt)	PP_1542	hypothetical protein
	?	NC_002947	1744377 =	52 (0.920)					coding (540/597 nt)	PP_1542	hypothetical protein

AACATCGCCGGCCTACCCGTTTCGCGCACTGGTCGCCCTACGAGACTCTTGAGGTCGCCGGCGAGTGGGCACCGACCATAAAAGCGGCCAAGGCCAGCTACAAAGAAGCGCTTCGGCTGCACCAGGCCAAGGGCCGAGCAGACAAGAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1744483‑1744332 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcgcTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGTAGGGCGACCAGTGCGCGAAACGGGTAGGCCGGCGATGTTCGAAGTAGGCGCTACCGCGTGGGTAGCGGACCATCCGGTATT  >  NC_002947/1744377‑1744525                                                                                                                                                                                                                                                                                                               AACATCGCCGGCCTACCCGTTTCGCGCACTGGTCGCCCTACGAGACTCTTGAGGTCGCCGGCGAGTGGGCACCGACCATAAAAGCGGCCAAGGCCAGCTACAAAGAAGCGCTTCGGCTGCACCAGGCCAAGGGCCGAGCAGACAAGAAGC                                                                                                                                                         >  2:310429/1‑150   CATCGCCGGCCTACCCGTTTCGCGCACTGGTCGCCCTACGAGACTCTTGAGGTCGCCGGCGAGTGGGCACCGACCATAAAAGCGGCCAAGGCCAGCTACAAAGAAGCGCTTCGGCTGCACCAGGACAAGGGCCGAGCAGACAAGAATCGC                                                                                                                                                       <  2:1593923/150‑1                                                                                                      AAAGAAGCGCTTCGGCTGCACCAGGCCAAGGGCCGAGCAGACAAGAAGCGCTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGTAGGGCGACCAGTGCGCGAAACGGGTAGGCCG                                                    >  2:966641/1‑150                                                                                                       AAGAAGCGCTTCGGCTGCACCAGGCCAAGGGCCGAGCAGACAAGAAGCGCTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGT                                                                                   >  1:752920/1‑118                                                                                                       AAGAAGCGCTTCGGCTGCACCAGGCCAAGGGCCGAGCAGACAAGAAGCGCTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGT                                                                                   <  2:752920/118‑1                                                                                                                                                   AAGCGCTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGTAGGGCGACCAGTGCGCGAAACGGGTAGGCCGGCGACGTTCGAAGTAGGCGCTACCGCGTGGGTAGCGGACCATCCG       <  1:1573572/150‑1                                                                                                                                                      CGCTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGTAGGGCGACCAGTGCGCGAAACGGGTAGGCCGGCGATGTTCGAAGTAGGCGCTACCGCGTGGGTAGCGGACCATCCGGTA    <  2:691281/150‑1                                                                                                                                                        CTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGTAGGGAGACCAGTGCGCGAAACGGATAGAACGGCATTGTGCATAGTAGGCTCTACCGCGTGGGTAGCGGACCATCCGGTATT  >  1:1599993/1‑150                                                                                                                                                                                                                                                                                                               AACATCGCCGGCCTACCCGTTTCGCGCACTGGTCGCCCTACGAGACTCTTGAGGTCGCCGGCGAGTGGGCACCGACCATAAAAGCGGCCAAGGCCAGCTACAAAGAAGCGCTTCGGCTGCACCAGGCCAAGGGCCGAGCAGACAAGAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1744483‑1744332 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcgcTTCTTTGTAGCTGGCCTTGGCCGCTTTTATGGTCGGTGCCCACTCGCCGGCGACCTCAAGAGTCTCGTAGGGCGACCAGTGCGCGAAACGGGTAGGCCGGCGATGTTCGAAGTAGGCGCTACCGCGTGGGTAGCGGACCATCCGGTATT  >  NC_002947/1744377‑1744525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.