New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899260 =	83 (1.390)	7 (0.130)	7/210	NT	9.1%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899320 =	67 (1.280)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CGGCGCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1899422‑1899260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTG  >  NC_002947/1899320‑1899469                                                                                                                                                                                                                                                                                                                           CGGCGCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGCGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCCCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACC                                                                                                                                                                     <  1:1571319/150‑1     GCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTG                                                                                                                                                                 >  1:1419557/1‑150      CCTTTGTCGTTAAGTGGTGAGTGCTGTCGACGTTTACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGTCAGCTATACCGGCCCTTTCGCGGGCATTCCCGCTTCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                <  2:505885/150‑1      CCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                <  2:1236479/150‑1      CCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                <  2:121666/150‑1      CCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                <  1:579615/150‑1       CTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGG                                                                                                                                                               >  2:1014474/1‑150           GTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCG                                                                                                                                                           <  1:4493/150‑1             CGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGG                                                                                                                                                         >  2:834080/1‑150                                                                       ATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTAC                                                                                                                                                                      <  1:1121254/79‑1                                                                       ATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTAC                                                                                                                                                                      >  2:1121254/1‑79                                                                         GGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                <  1:945036/83‑1                                                                         GGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTACCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                >  2:945036/1‑83                                                                                            cTTCGCGGGCACGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGTGGCGCAGTACCTGTGG                                                                                                                                                                >  1:412429/2‑64                                                                                            cTTCGCGGGCACGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGTGGCGCAGTACCTGTGG                                                                                                                                                                <  2:412429/63‑1                                                                                                      ATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                <  1:366125/54‑1                                                                                                      ATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                >  2:366125/1‑54                                                                                                          CCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCA                                                                       >  1:131807/1‑139                                                                                                          CCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCA                                                                       <  2:131807/139‑1                                                                                                           CGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                <  1:889106/49‑1                                                                                                           CGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG                                                                                                                                                                >  2:889106/1‑49                                                                                                                  ACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGTATAG                                                                                                                                <  1:466151/74‑1                                                                                                                  ACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGTATAG                                                                                                                                >  2:466151/1‑74                                                                                                                    AGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCC                                                  >  1:1558275/1‑150                                                                                                                         TATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGG                                                                                             <  2:19992/102‑1                                                                                                                         TATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGG                                                                                             >  1:19992/1‑102                                                                                                                                                     CCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCT                                     >  2:479370/1‑130                                                                                                                                                     CCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCT                                     <  1:479370/130‑1                                                                                                                                                      CTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGctgcc                >  2:124537/1‑145                                                                                                                                                       TGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGC               <  2:494806/150‑1                                                                                                                                                         ctttcGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGACGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCG             >  2:239541/6‑150                                                                                                                                                                   CATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATG‑CGGGGCAGCCGGCGCCTTTTTG  <  1:1068022/150‑1                                                                                                                                                                                                                                                                                                                           CGGCGCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGACAGCCCGGGATGAGGTAGATCAGCAATTTATGGGCCAGCTATACCGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1899422‑1899260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTG  >  NC_002947/1899320‑1899469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.