New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2273924 =	48 (0.800)	6 (0.100)	6/232	NT	11.0%	coding (486/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	2273958 =	51 (0.880)					coding (452/1041 nt)	PP_2004	AraC family transcriptional regulator

GCGGCCAACTACCGCGGCCATTCCCGCTTTGAGGAAGATGCCCAGGGCGCCTGGCTGCGCTTCTATTCCATCAGCCCCTACAACGACTACAACCGCTTTGTGGTCGACTCACTGCTGGCCGGCTGGCTGGCCCAGTTGGCCGAGCT‑‑‑‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2274073‑2273924 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACG  >  NC_002947/2273958‑2274103                                                                                                                                                                                                                                                                                                              GCGGCCAACTACCGCGGCCATTCCCGCTTTGAGGAAGATGCCCAGGGCGCCTGGCTGCGCTTCTATTCCATCAGCCCCTACAACGACTACAACCGCTTTGTGGTCGACTCACTGCTGGCCGGCTGGCTGGCCCAGTTGGCCGAGCT‑‑‑‑GGCC                                                                                                                                                    >  1:930582/1‑150                                                                                                               ACTGCTGGCCGGCTGGCTGGCCCAGTTGGCCGAGCT‑‑‑‑GGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTT                                      >  2:331030/1‑150                                                                                                                CTGCTGGCCGGCTGGCTGGCCCAGTTGGCCGAGCT‑‑‑‑GGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAG                                                                                  >  2:811838/1‑105                                                                                                                CTGCTGGCCGGCTGGCCGGCCCAGTTGGCCGAGCT‑‑‑‑GGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAG                                                                                  <  1:811838/105‑1                                                                                                                        CGGCTGGCTGGCCCAGTTGGCCGAGCTGGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCG                                 >  1:583250/1‑150                                                                                                                                TGGCCCAGTTGGCCGAGCTGGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGC                         <  2:583250/150‑1                                                                                                                                 GGCCCAGTTGGCCGAGCT‑‑‑‑GGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTC                    <  1:331030/150‑1                                                                                                                                                       GGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACG  >  2:855718/1‑150                                                                                                                                                                                                                                                                                                              GCGGCCAACTACCGCGGCCATTCCCGCTTTGAGGAAGATGCCCAGGGCGCCTGGCTGCGCTTCTATTCCATCAGCCCCTACAACGACTACAACCGCTTTGTGGTCGACTCACTGCTGGCCGGCTGGCTGGCCCAGTTGGCCGAGCT‑‑‑‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2274073‑2273924 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACG  >  NC_002947/2273958‑2274103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.