| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2991869 = | NA (NA) | 3 (0.050) | 3/228 | NT | 5.6% | coding (244/516 nt) | hcpC‑I | hemolysin‑coregulated protein |
| ? | NC_002947 | 2991871 = | 53 (0.890) | coding (242/516 nt) | hcpC‑I | hemolysin‑coregulated protein | |||||
AAGGCCATGAAGATCAGATTCTGGTTCAGGAAATCAAGCATGAGGTGACTACGCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTatcagg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2992015‑2991869‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGGGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCACCTCATGCTTGATTTCCTGAACCAGAATCTGATCTTCATGGCCTTGTTGGA > NC_002947/2991871‑2992021 AAGGCCATGAAGATCAGATTCTGGTTCAGGAAATCAAGCATGAGGTGACTACGCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTATC < 1:47093/150‑1AAGGCCATGAAGATCAGATTCTGGTTCAGGAAATCAAGCATGAGGTGACTACGCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTATC < 2:1195109/150‑1 AGGCCATGAAGATCAGATTCTGGTTCAGGAAATCAAGCATGAGGTGACTACGCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTATCA < 2:303532/150‑1 AGGCCATGAAGATCAGATTCTGGTTCAGGAAATCAAGCATGAGGTGACTACGCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTATCA < 1:979244/150‑1 GGCCATGAAGATCAGATTCTGGTTCAGGAAATCAAGCATGAGGTGACTACGCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTATCAG < 2:1014692/150‑1 GAAATCAAGCATGAGGTCACTACTCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGAAAAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATACATCAGGGGGGTAGCTTTGTTCAGTGAACTGGT < 1:1594112/150‑1 CCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTATCA > 1:1355618/1‑89 CCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTATCA < 2:1355618/89‑1 ATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATACATCAGGGGGGTAGCT < 1:1594088/66‑1 ATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATACATCAGGGGGGTAGCT > 2:1594088/1‑66 ATCAGGGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCAC < 1:587904/101‑1 ATCAGGGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCAC > 2:587904/1‑101 TCAGGGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGAGCTTGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCACCTCATGCTTGATTTCCTGAACCAGAATCTGATCTTCATGGCCTTGTTGGA > 2:557969/1‑150 GGGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCACCTCATGCTTGATTTCCTGAACCAGAATCTGATCTTCATGGCCTTGTT > 1:526638/1‑144 GGGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCACCTCATGCTTGATTTCCTGAACCAGAATCTGATCTTCATGGCCTTGTT < 2:526638/144‑1 GGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCAC > 1:963583/1‑96 GGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCAC < 2:963583/96‑1 AAGGCCATGAAGATCAGATTCTGGTTCAGGAAATCAAGCATGAGGTGACTACGCCCACTGACCCCCAGAGCGGTCAACCGAGTGGCCAGCGCGTGCATAAGCCTTTCATATTCACCAGTTCACTGAACAAAGCTACCCCCCTGATGTatcagg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2992015‑2991869‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGGGGGGTAGCTTTGTTCAGTGAACTGGTGAATATGAAAGGCTTATGCACGCGCTGGCCACTCGGTTGACCGCTCTGGGGGTCAGTGGGCGTAGTCACCTCATGCTTGATTTCCTGAACCAGAATCTGATCTTCATGGCCTTGTTGGA > NC_002947/2991871‑2992021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |