New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3180485 =	58 (0.970)	4 (0.070)	4/230	NT	7.3%	coding (232/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein
	?	NC_002947	3180516 =	46 (0.800)					coding (201/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein

TGGTGGCCGGGCTCACGACGGACTACCCAGATACTCGTATCGAAGTCCTCGACACCTCGGTGGCTGAAGCACTACAGACCGCCCGAGAATTGGAGCAGGCAGGCAAGGTCGATGTGTTCGTCTGCGCCGGGGCGACCGCCGCCTACCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3180637‑3180485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTTCGATACGAGTATCTGGGTAGTCCGTCGTGAGCCCGGCCACCACATGGGCGAGCCGGCTCCGTTGTTG  >  NC_002947/3180516‑3180662                                                                                                                                                                                                                                                                                                              TGGTGGCCGGGCTCACGACGGACTACCCAGATACTCGTATCGAAGTCCTCGACACCTCGGTGGCTGAAGCACTACAGACCGCCCGAGAATTGGAGCAGGCAGGCAAGGTCGATGTGTTCGTCTGCGCCGGGGCGACCGCCGCCTACCTGC                                                                                                                                                        <  2:1014069/150‑1    TGGCCGGGCTCACGACGGACTACCCAGATACTCGTATCGAAGTCCTCGACACCTCGGTGGCTGAAGCACTACAGACCGCCCGAGAATTGGAGCAGGCAGGCAAGGTCGATGTGTTCGTCTGCGCCGGGGCGACCGCCGCCTACCTGCGCA                                                                                                                                                     <  1:564268/150‑1                                                                                                                        GTCTGCGCCGGGGCGACCGCCGCCTACCTGCGCAGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCG                                                                                                              <  1:157373/73‑1                                                                                                                        GTCTGCGCCGGGGCGACCGCCGCCTACCTGCGCAGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCG                                                                                                              >  2:157373/1‑73                                                                                                                         TCTGCGCCGGGGCGACCGCCGCCTACCTGCGCAGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTT                                                                     >  1:249486/1‑113                                                                                                                         TCTGCGCCGGGGCGACCGCCGCCTACCTGCGCAGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTT                                                                     <  2:249486/113‑1                                                                                                                                                       GCAGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTTCGATACGAGTATCTGGGTAGTCCGTCGTGAGCCCGGCCACCACATGGGCGAGCCGGCTCCGTTGTTG  >  1:104163/1‑150                                                                                                                                                       GCAGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTTCGATACGAGTATCTGGGTAGTCCGTCGTGAGCCCGGCCACCACATGGGCGAGCCGGCTCCGTTGTTG  >  2:1486542/1‑150                                                                                                                                                         AGACGAACACATCGACCTTGCCTGCCCGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTTCGATACGAGTATCTGGGTAGTCCGTCGTGAGCCCGGCCACCACATGGGCGAGCCGGCTCC         <  1:884873/141‑1                                                                                                                                                         AGACGAACACATCGACCTTGCCTGCCCGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTTCGATACGAGTATCTGGGTAGTCCGTCGTGAGCCCGGCCACCACATGGGCGAGCCGGCTCC         >  2:884873/1‑141                                                                                                                                                                                                                                                                                                              TGGTGGCCGGGCTCACGACGGACTACCCAGATACTCGTATCGAAGTCCTCGACACCTCGGTGGCTGAAGCACTACAGACCGCCCGAGAATTGGAGCAGGCAGGCAAGGTCGATGTGTTCGTCTGCGCCGGGGCGACCGCCGCCTACCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3180637‑3180485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaGACGAACACATCGACCTTGCCTGCCTGCTCCAATTCTCGGGCGGTCTGTAGTGCTTCAGCCACCGAGGTGTCGAGGACTTCGATACGAGTATCTGGGTAGTCCGTCGTGAGCCCGGCCACCACATGGGCGAGCCGGCTCCGTTGTTG  >  NC_002947/3180516‑3180662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.