New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3478034 = | 52 (0.870) | 5 (0.080) | 5/240 | NT | 7.8% | intergenic (‑26/+70) | PP_3088/PP_3089 | hypothetical protein/hypothetical protein |
? | NC_002947 | 3478063 = | 66 (1.100) | intergenic (‑55/+41) | PP_3088/PP_3089 | hypothetical protein/hypothetical protein |
CTGTGTTCCGCAGCGCGCCGGGTTTTCCGGCGCGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3478071‑3478034 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGT > NC_002947/3478063‑3478187 CTGTGTTCCGCAGCGCGCCGGGTTTTCCGGCGCGCTGTGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAAC > 1:493777/1‑89 CTGTGTTCCGCAGCGCGCCGGGTTTTCCGGCGCGCTGTGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAAC < 2:493777/89‑1 TTCCGCAGCGCGCCGGGTTTTCCGGCGCGCTGTGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTT > 1:1314062/1‑89 TTCCGCAGCGCGCCGGGTTTTCCGGCGCGCTGTGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTT < 2:1314062/89‑1 CGCGCCGGGTTTTCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGT > 2:72763/1‑150 CTGTGTTCCGCAGCGCGCCGGGTTTTCCGGCGCGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3478071‑3478034 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGT > NC_002947/3478063‑3478187 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |