New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3613318 =	75 (1.250)	4 (0.070)	4/226	NT	5.4%	coding (409/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613342 =	69 (1.220)					coding (385/3396 nt)	mcoA	Mn(II) copper oxidase A

GCACCGACAACGTGCTGCCACCTGCCCTGCAAACGTCGGACAAGTATCCTACCAACGGCAAACCCAGCCCGTTGTTCGGTGCGCAACCATTCACCCAGCAACTGTTACTGTTCGAAGAATTCGGGTCAGAGAAGCTC‑GACCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3613461‑3613318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacccgaATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACG  >  NC_002947/3613342‑3613487                                                                                                                                                                                                                                                                                                     GCACCGACAACGTGCTGCCACCTGCCCTGCAAACGTCGGACAAGTATCCTACCAACGGCAAACCCAGCCCGTTGTTCGGTGCGCAACCATTCACCCAGCAACTGTTACTGTTCGAAGAATTCGGGTC‑GAGCTTCTCTGACCCGAATTCTT                                                                                                                                              <  2:190964/150‑1            GTGCTGCCACCTGCCCTGCAAACGTCGGACAAGTATCCTACCAACGGCAAACCCAGCCCGTTGTTCGGTGCGCAACCATTCACCCAGCAACTGTTACTGTTCGAAGAATTCGGGTCAGAGAAGCTC‑GAC                                                                                                                                                        >  1:756774/1‑129            GTGCTGCCACCTGCCCTGCAAACGTCGGACAAGTATCCTACCAACGGCAAACCCAGCCCGTTGTTCGGTGCGCAACCATTCACCCAGCAACTGTTACTGTTCGAAGAATTCGGGTCAGAGAAGCTC‑GAC                                                                                                                                                        <  2:756774/129‑1               CTGCCACCTGCCCTGCAAACGTCGGACAAGTATCCTACCAACGGCAAACCCAGCCCGTTGTTCGGTGCGCAACCATTCACCCAGCAACTGTTACTGTTCGAAGAATTCGGGTC‑GAGCTTCTCTGACCCGAATTCTTCGAACAGTAACAGT                                                                                                                                <  2:1516584/150‑1                                                                                                                            GGTCAGAGAAGCTC‑GACCCGAATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGC                                                                                                            >  1:1409199/1‑61                                                                                                                            GGTCAGAGAAGCTC‑GACCCGAATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGC                                                                                                            <  2:1409199/61‑1                                                                                                                                            ACCCGAATTCTTCGAACAGTAACAGTTGCTGGGGGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTTCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACA    >  2:33002/1‑150                                                                                                                                             CCCGAATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACAC   >  1:1418568/1‑150                                                                                                                                              CCGAATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACG  >  1:242424/1‑150                                                                                                                                                                                                                                                                                                     GCACCGACAACGTGCTGCCACCTGCCCTGCAAACGTCGGACAAGTATCCTACCAACGGCAAACCCAGCCCGTTGTTCGGTGCGCAACCATTCACCCAGCAACTGTTACTGTTCGAAGAATTCGGGTCAGAGAAGCTC‑GACCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3613461‑3613318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacccgaATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACG  >  NC_002947/3613342‑3613487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.