New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3622255 = | 59 (0.990) | 4 (0.070) | 4/216 | NT | 7.0% | intergenic (‑175/+51) | PP_3192/PP_3193 | hypothetical protein/hypothetical protein |
? | NC_002947 | 3622301 = | 54 (1.000) | intergenic (‑221/+5) | PP_3192/PP_3193 | hypothetical protein/hypothetical protein |
GGGCGCCATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3622414‑3622255 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccaaggcgTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC > NC_002947/3622301‑3622449 GGGCGCCCTCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGTTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACTCCTTGGCCTGTTCCACCATCAATTGGCGGAGCCA < 2:805849/150‑1 CATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAA > 2:301833/1‑150 ATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAG > 1:349323/1‑150 ATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAG < 2:1293768/150‑1 TCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGG > 2:640194/1‑150 ACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGC > 2:787101/1‑73 ACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGC < 1:787101/73‑1 CCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATG < 1:1009096/104‑1 CCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATG > 2:1009096/1‑104 TTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGC > 1:553291/1‑89 TTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGC < 2:553291/89‑1 GCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGA < 2:867942/150‑1 CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAA < 1:1223031/150‑1 CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAA < 2:603542/150‑1 CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGA > 1:89992/1‑131 CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGA < 2:89992/131‑1 CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATAAACACTGAATCCTATGGGGCCCAGCAGGCGACCTTCTGCATCGCGCAGAA > 2:675925/1‑150 GCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACG > 1:574200/1‑150 GTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC > 1:186091/1‑150 GTTGGCTCACGTCTGAAGATCGCCCCCGTCGACCCACACCCCGAGCTCTTCGATGGCCAGCAGCGCGCCCCAAACATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC < 1:772890/150‑1 GGGCGCCATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3622414‑3622255 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccaaggcgTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC > NC_002947/3622301‑3622449 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |