| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3839412 = | 41 (0.680) | 6 (0.110) | 6/226 | NT | 13.4% | coding (292/1158 nt) | PP_3389 | membrane protein |
| ? | NC_002947 | 3839436 = | 39 (0.690) | coding (316/1158 nt) | PP_3389 | membrane protein | |||||
CCAGTCGCGAGATTTTTACGCCGTACTTCAGGTAAAAATACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACAGCTATGCCGGTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3839565‑3839412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttccATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACT > NC_002947/3839436‑3839563 CCAGTCGCGAGATTTTTACGCCGTACTTCAGGTACAAATACAATGCTACGCCTGAATCTGAAGCCAATAGGTGTGTAAGTATGCCGGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACAGCTATTCCGG > 1:371759/1‑150CCAGTCGCGAGATTTTTACGCCGTACTTCAGGTAAAAACACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACAGCTATGCCGG < 1:587866/150‑1 CAGTCGCGAGATTTTTACGCCGTACTTCAGGTAAAAATACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACAGCTATGCCGGT > 2:1605428/1‑150 gGTCTCGAGAGTTTTACGCCGTACTTCAGGTAAAAATACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACAGCTATGCCGGTT < 2:588942/149‑1 TCGCGAGATTTTTACGCCGTACTTCAGGTAAAAATACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACATCTATGCCGGTTCC < 2:965441/150‑1 TCGCGAGATTTTTACGCCGTACTTCAGGTAAAAATACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACAGCTATGCCGGTTCC > 2:623228/1‑150 CTTCAGGTAAAAATACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAA < 2:13117/150‑1 GCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGAT > 1:1473195/1‑104 GCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGAT < 2:1473195/104‑1 AACCGACAGCTATGCCGGTTCCGTCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCA < 1:330940/67‑1 AACCGACAGCTATGCCGGTTCCGTCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCA > 2:330940/1‑67 AACCGACAGCTATGCCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACT < 1:13117/150‑1 CCAGTCGCGAGATTTTTACGCCGTACTTCAGGTAAAAATACAATGCTGCGCCTGAAGCTGAAGCCAATAGAGCTGTAAGTATGACTGCTATAAAGGAGATTGAATAAGGTTGAGTGATATCAAGCCAGATGGAACCGACAGCTATGCCGGTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3839565‑3839412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttccATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACT > NC_002947/3839436‑3839563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |