New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4151960 | 57 (0.950) | 6 (0.100) | 7/230 | NT | 9.5% | intergenic (+106/+45) | PP_3655/PP_3656 | cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin |
? | NC_002947 | = 4152002 | 60 (1.050) | intergenic (+148/+3) | PP_3655/PP_3656 | cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin |
ACCGTCGTCGGCAGACCAGCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4151811‑4151960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaatAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGAT < NC_002947/4152002‑4151854 ACCGTCGTCGGCAGACCAGCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT > 1:194844/1‑150 CAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT < 1:1009389/128‑1 CAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT > 2:1009389/1‑128 GTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTC > 1:118833/1‑140 GTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTC < 2:118833/140‑1 GAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGGCGCAAAACGGGCCGGCCTTCTGAA‑GCCGGCCCAT > 1:529384/1‑114 GAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGGCGAAAAACGGGCCGGCCTTCTGAA‑GCCGGCCCAT < 2:529384/114‑1 AGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCA < 1:560539/80‑1 AGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCA > 2:560539/1‑80 GGAATAAATGGCGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGC > 1:482516/1‑150 ATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGA < 1:1098833/150‑1 TAGCG‑‑AAACGGACCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGAT > 1:962163/1‑150 ACCGTCGTCGGCAGACCAGCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4151811‑4151960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaatAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGAT < NC_002947/4152002‑4151854 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |