New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 457327569 (1.150)4 (0.080) 4/190 NT 6.3% intergenic (+39/‑98) PP_4054/glgX hypothetical protein/glycogen debranching enzyme
?NC_002947 = 4573292 64 (1.350)intergenic (+56/‑81) PP_4054/glgX hypothetical protein/glycogen debranching enzyme

AAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4573105‑4573275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgctcctacaTGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAGGCGC  <  NC_002947/4573292‑4573144
                                                                                                                                                                                                                                                                                                                                
AAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTC                                                                                                                                                                            <  2:1632152/150‑1
 AGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCG                                                                                                                                                                           >  2:159852/1‑150
        CCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAA                                                                                                                                                                    >  1:1506890/1‑150
         CCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAA                                                                                                                                                                   >  2:819659/1‑150
         CCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTACCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAA                                                                                                                                                                   >  1:189323/1‑150
          CGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAAC                                                                                                                                                                  <  2:443359/150‑1
              CAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                              <  2:818374/150‑1
               cAGAAGGCAGCGGCCAAGCCGCAGGCGCCTGCCAAACCCAACCCCGGGCCCCTGCCGCGGGGCAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGGAAACCCGCT                                                                                                                                                             >  2:438109/2‑150
                                          CCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTA                                                                                                                                  <  1:1311681/150‑1
                                                              TGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAA                                                                                                              <  2:1506890/150‑1
                                                                                                     CCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGG                                                                                                                           <  2:236101/98‑1
                                                                                                     CCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGG                                                                                                                           >  1:236101/1‑98
                                                                                                                                                   TTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCA                         <  1:746073/150‑1
                                                                                                                                                   TTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCA                         >  2:688610/1‑150
                                                                                                                                                      GCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCC                      <  1:1445005/150‑1
                                                                                                                                                        GGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCG                                 >  1:418115/1‑137
                                                                                                                                                        GGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCG                                 <  2:418115/137‑1
                                                                                                                                                             AACCCGCTTCTACCTGCTCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGG               <  2:912856/150‑1
                                                                                                                                                             AACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGG               <  2:847351/150‑1
                                                                                                                                                              ACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCC                                                                                                       >  2:128549/1‑61
                                                                                                                                                              ACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCC                                                                                                       <  1:128549/61‑1
                                                                                                                                                               CCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGT             >  1:208600/1‑150
                                                                                                                                                               CCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGC                                                             <  2:531241/102‑1
                                                                                                                                                               CCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGC                                                             >  1:531241/1‑102
                                                                                                                                                                CCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCC                      <  2:271818/140‑1
                                                                                                                                                                CCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCC                      >  1:271818/1‑140
                                                                                                                                                                 CGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTC           <  2:1418195/150‑1
                                                                                                                                                                     CCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCA       <  1:1529389/150‑1
                                                                                                                                                                      CTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAG      <  1:875128/150‑1
                                                                                                                                                                        ACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAGGC    <  2:5782/150‑1
                                                                                                                                                                        ACATGCGCCTGTGATGAACCTGTAGGAGCGCGTGTACTGGCGAAGAGGCCCGGACAGGCTTAACCCGCAGTAGGCTTTTTCACCGCCCTGGGCTTGTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAGGC    <  2:610310/150‑1
                                                                                                                                                                         CATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                         >  2:160108/1‑48
                                                                                                                                                                         CATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                         <  1:160108/48‑1
                                                                                                                                                                          ATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAGGCGC  >  2:476154/1‑150
                                                                                                                                                                                                                                                                                                                                
AAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4573105‑4573275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgctcctacaTGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAGGCGC  <  NC_002947/4573292‑4573144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.