New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4864498 = | 67 (1.120) | 4 (0.070) | 4/232 | NT | 5.8% | coding (1420/3489 nt) | smc | chromosome partition protein Smc |
? | NC_002947 | 4864539 = | 65 (1.120) | coding (1379/3489 nt) | smc | chromosome partition protein Smc |
TCGAGGAGCGCGAGCAACTGGGCAGCGACCCGCAGGATGCCGCCATGCTCGAACTGGCCGAGCAACTGGCCAGCAGCGAAATGCTGCTGGAAGAACTGCAGCTCTGCGAAGAGCAGGTGATCGAGCGCCTGGAAAGCGCGCGCGAGCAACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4864650‑4864498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCTTCGCAGAGCTGCAGTTCTTCCAGCAGCATTTCGCTGCTGGCCAGTTGCTCGGCCAGTTCGAGCATGGCGGCATCCTGCGGGTCGCTGCCCAGTTGCTCGCGCTCCTCGAC > NC_002947/4864539‑4864651 TCGAGGAGCGCGAGCAACTGGGCAGCGACCCGCAGGATGCCGCCATGCTCGAACTGGCCGAGCAACTGGCCAGCAGCGAAATGCTGCTGGAAGAACTGCAGCTCTGCGAAGAGCAGGTGATCGAGCGCCTGGAAAGCGCGCGCGAGCAAC < 2:354926/150‑1 AGGAGCGCGAGCAACTGGGCAGCGACCCGCAGGATGCCGCCATGCTCGAACTGGCCGAGCAACTGGCCAGCAGCGAAATGCTGCTGGAAGAACTGCAGCTCTGCGAAGAGCAGGTGATCGAGCGCCTGGAAAGCGCGCGCGAGCAACTGC < 2:982116/150‑1 GGGCAGCGACCCGCAGGATGCCGCCATGCTCGAACTGGCCGAGCAACTGGCCAGCAGCGAAATGCTGCTGGAAGAACTGCAGCTCTGCGAAGAGCAGGTGATCGAGCGCCTGGAAAGCGCGCGCGATCACCTGCTCTTCGCAGAGCTGCA < 1:663133/150‑1 AGGTGATCGAGCGCCTGGAAAGCGCGCGCGAGCAACTGCTCTTCGCAGAGCTGCAGTTCTTCCAGCAGCATTTCGCTGCTGGCCAGTTGCTCGGCCAGTTCGAGCATGGCGGCATCCTGCGGG < 1:1138350/123‑1 AGGTGATCGAGCGCCTGGAAAGCGCGCGCGAGCAACTGCTCTTCGCAGAGCTGCAGTTCTTCCAGCAGCATTTCGCTGCTGGCCAGTTGCTCGGCCAGTTCGAGCATGGCGGCATCCTGCGGG > 2:1138350/1‑123 GTGATCGAGCGCCTGGAAAGCGCGCGCGAGCAACTGCTCTTCGCAGAGCTGCAGTTCTTCCAGCAGCATTTCGCTGCTGGCCAGTTGCTCGGCCAGTTCGAGCATGGCGGCATCCTGCGGGTCGCTGCCCAGTTGCTCGCGCTCCTCGAC > 2:1320526/1‑150 TGCTCTTCGCAGAGCTGCAGTTCTTCCAGCAGCATTTCGCTGCTGGCCAGTTGCTCGGCCAGTTCGAGCAT > 1:852880/1‑71 TGCTCTTCGCAGAGCTGCAGTTCTTCCAGCAGCATTTCGCTGCTGGCCAGTTGCTCGGCCAGTTCGAGCAT < 2:852880/71‑1 TCGAGGAGCGCGAGCAACTGGGCAGCGACCCGCAGGATGCCGCCATGCTCGAACTGGCCGAGCAACTGGCCAGCAGCGAAATGCTGCTGGAAGAACTGCAGCTCTGCGAAGAGCAGGTGATCGAGCGCCTGGAAAGCGCGCGCGAGCAACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4864650‑4864498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCTTCGCAGAGCTGCAGTTCTTCCAGCAGCATTTCGCTGCTGGCCAGTTGCTCGGCCAGTTCGAGCATGGCGGCATCCTGCGGGTCGCTGCCCAGTTGCTCGCGCTCCTCGAC > NC_002947/4864539‑4864651 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |