New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5340968	50 (0.840)	3 (0.050)	3/226	NT	5.7%	coding (27/801 nt)	panB	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
	?	NC_002947	= 5340983	52 (0.920)					coding (42/801 nt)	panB	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase

GCATACCCGTATTTAGGCCCGGACGGACCTGTGCCCGAACATCACGCGCGATGATGTGCCGCTCCGGAAGATGACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5340813‑5340968 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccctt‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCATCGCGCGTGATGTTCGGGCACAGGTC  <  NC_002947/5340983‑5340838                                                                                                                                                                                                                                                                                                                   GCATACCCGTATTTAGGCCCGGACGGACCTGTGCCCGAACATCACGCGCGATGATGTGCCGCTCCGGAAGATGACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACC                                                                                                                                                             >  1:866240/1‑150   ATACCCGTATTTAGGCCCGGACGGACCTGTGCCCGAACATCACGCGCGATGATGTGCCGCTCCGGAAGATGACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCAC                                                                                                                                                           <  2:924307/150‑1       CCGTATTTAGGCCCGGACGGACCTGTGCCCGAACATCACGCGCGATGATGTGCCGCTCCGGAAGATGACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCACCCTT                                                                                                                                                       >  1:638275/1‑150                                              GCGCGATGATGTGCCGCTCCGGAAGATGACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCA                                                                                                                                                            >  1:454286/1‑106                                              GCGCGATGATGTGCCGCTCCGGAAGATGACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCA                                                                                                                                                            <  2:454286/106‑1                                                                         GACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCACCCTT‑‑‑GGCCTTGAGGCCGTTAAGGGT                                                                                                                               >  1:390148/1‑105                                                                         GACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCACCCTT‑‑‑GGCCTTGAGGCCGTTAAGGGT                                                                                                                               <  2:390148/105‑1                                                                                                                          TTTCCTACATGCCTGAAGTAACCCTTACCACCCTTAACGGCCTCAAGGCC‑‑‑AAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCA                                 >  2:1467814/1‑150                                                                                                                                                         CCTT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGTGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCA                            <  1:367288/124‑1                                                                                                                                                         CCTT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGATATTCTTCGTTCAGGCGCTGTAAAAAACGACTGCATTTAACGAGTGTAGTCATCTTCCTGATCGGCACATCATCGCGCGTGATGTTCGGGCACATGTC  >  2:357175/1‑150                                                                                                                                                         CCTT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCATCGCGCGTGATGTTCGGGCACAGGT   >  2:1190684/1‑149                                                                                                                                                         CCTT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCATCGCGCGTGATGTTCGGGCACAGGT   <  1:1190684/149‑1                                                                                                                                                         CCTT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCA                            >  2:367288/1‑124                                                                                                                                                         CCTT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCA                                                                 <  1:976642/87‑1                                                                                                                                                         CCTT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCA                                                                 >  2:976642/1‑87                                                                                                                                                           TT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCATCGCGCGTGATGTTCGGGCAC       <  2:646064/143‑1                                                                                                                                                           TT‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCATCGCGCGTGATGTTCGGGCAC       >  1:646064/1‑143                                                                                                                                                                                                                                                                                                                   GCATACCCGTATTTAGGCCCGGACGGACCTGTGCCCGAACATCACGCGCGATGATGTGCCGCTCCGGAAGATGACTACACGCGTTGAATGCAGTCGTTTTTTACAGCGCCTGAACGAGGAATTTCCTACATGCCTGAAGTAACCCTTACCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5340813‑5340968 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccctt‑‑‑GGCCTTGAGGCCGTTAAGGGTGGTAAGGGTTACTTCAGGCATGTAGGAAATTCCTCGTTCAGGCGCTGTAAAAAACGACTGCATTCAACGCGTGTAGTCATCTTCCGGAGCGGCACATCATCGCGCGTGATGTTCGGGCACAGGTC  <  NC_002947/5340983‑5340838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.