New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5421204 =	60 (1.000)	4 (0.070)	4/220	NT	7.3%	intergenic (‑58/+107)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase
	?	NC_002947	5421286 =	47 (0.860)					intergenic (‑140/+25)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase

TGGATTGGCATGCGGCGGATTGCCGGGCGTTGAAGGTGATGCTGGGCTGACGCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5421360‑5421204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGCCCGCCCGCAG  >  NC_002947/5421286‑5421428                                                                                                                                                                                                                                                                                                              TGGATTGGCATGCGGCGGATTGCCGGGCGTTGAAGGTGATGCTGGGCTGACGCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTTCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGC                                                                                                                                                        <  1:229057/150‑1  GGATTGGCATGCGGCGGATTGCCGGGCGTTGAAGGTGATGCTGGGCTGACGCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCC                                                                                                                                                       >  1:1563789/1‑150     TTGGCATGCGGCGGATTGCCGGGCGTTGAAGGTGATGCTGGGCTGACGCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCCCGC                                                                                                                                                    >  1:1325026/1‑150      TGGCATGCGGCGGATTGCCGGGCGTTGAAGGTGATGCTGGGCTGACGCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCCCGCG                                                                                                                                                   >  2:147063/1‑150                                                    GCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGT                                                                                                                                                          >  2:645882/1‑97                                                    GCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGT                                                                                                                                                          <  1:645882/97‑1                                                          GTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGC                                                                                                                                                        >  2:222579/1‑93                                                          GTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGC                                                                                                                                                        <  1:222579/93‑1                                                                        CCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCCGCATCACCTTCAACGCCCGGCAATCCGCCGC                                                                                 >  1:24638/1‑150                                                                                     ATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACC                                                                                                        <  1:282933/114‑1                                                                                     ATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACC                                                                                                        >  2:282933/1‑114                                                                                                                                           GGGCGGGCGTGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCC              <  2:24638/150‑1                                                                                                                                                    TGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGCCCGCCCG     <  1:1088543/150‑1                                                                                                                                                     GCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCAT                                                                               >  1:131683/1‑75                                                                                                                                                     GCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCAT                                                                               <  2:131683/75‑1                                                                                                                                                      CCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGCCCGCCCGCA   <  1:1031732/150‑1                                                                                                                                                       CCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCCCCTTCCACGCCCGGCAATCCGCCACATGCCAATCCACCAGCTCTGTCCAGGGGGTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGCCCGCCCGCAG  >  2:183583/1‑150                                                                                                                                                       CCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGCCCGCCCGCAG  >  1:1257428/1‑150                                                                                                                                                       CCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGC                         >  1:1009517/1‑127                                                                                                                                                       CCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGC                         <  2:1009517/127‑1                                                                                                                                                       CCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCA                                           <  2:1305234/109‑1                                                                                                                                                       CCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCA                                           >  1:1305234/1‑109                                                                                                                                                                                                                                                                                                              TGGATTGGCATGCGGCGGATTGCCGGGCGTTGAAGGTGATGCTGGGCTGACGCGTGTGTTGGCAATGCGGGCCTCTTCGCGGGCATGCCCGCTTCCACAGGTATTGCGCACGTCTCGGGGCCTGTGGTGCCCCTGTGGGGGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5421360‑5421204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGCCCGCCCGCAG  >  NC_002947/5421286‑5421428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.