New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5690116 | 54 (0.900) | 4 (0.070) | 4/228 | NT | 7.9% | coding (283/402 nt) | pilG | pilus biosynthesis/twitching motility protein PilG |
? | NC_002947 | = 5690136 | 42 (0.740) | coding (263/402 nt) | pilG | pilus biosynthesis/twitching motility protein PilG |
TCAGGAAAGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5689962‑5690116 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgATGGCCTGTTCGACAAGGCC‑‑CGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAAGCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCTGACCGAG < NC_002947/5690136‑5689992 TCAGGAAAGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGC > 1:381673/1‑150 AGGAAAGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTCACTTGCTGAACGGCTTGGTGGTGAACTGGTCGTAACCGACCACCCGCCC > 2:1502397/1‑150 CAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGCGGGT < 1:271371/150‑1 AGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGCGGG > 1:406560/1‑148 AGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGCGGG < 2:406560/148‑1 AACCGACCACCCGCCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAAGCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACAC > 2:1527792/1‑150 CCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAAGCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCTGACCGAG > 1:1225986/1‑150 TCAGGAAAGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5689962‑5690116 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgATGGCCTGTTCGACAAGGCC‑‑CGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAAGCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCTGACCGAG < NC_002947/5690136‑5689992 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |