| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5773906 = | 72 (1.200) | 6 (0.110) | 6/224 | NT | 8.6% | coding (413/657 nt) | betI | choline‑responsive transcriptional repressor BetI |
| ? | NC_002947 | 5773970 = | 60 (1.070) | coding (477/657 nt) | betI | choline‑responsive transcriptional repressor BetI | |||||
TCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5774040‑5773906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAA > NC_002947/5773970‑5774113 TCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGACTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGC > 1:894680/1‑132TCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGACTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGC < 2:894680/132‑1 ATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACG > 1:468204/1‑150 GGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATA > 2:166202/1‑150 CAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAA < 2:468204/150‑1 CAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGC‑‑‑‑CTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTAC > 2:48331/1‑150 CCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGTTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGAAACAAACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAA < 1:1275789/150‑1 ATGGTAGAGCGGCAGGGCGCGGC‑‑‑‑CTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGG < 1:48331/150‑1 GGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAA > 1:1023330/1‑150 TCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5774040‑5773906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAA > NC_002947/5773970‑5774113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |