| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5803276 | 51 (0.850) | 4 (0.070) | 4/230 | NT | 8.1% | coding (578/1017 nt) | PP_5081 | type IV pili biogenesis protein |
| ? | NC_002947 | = 5803297 | 42 (0.730) | coding (557/1017 nt) | PP_5081 | type IV pili biogenesis protein | |||||
GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5803215‑5803276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGCCGTTGGCGCAGCT < NC_002947/5803297‑5803150 GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAG < 1:393230/85‑1GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAG > 2:393230/1‑85 GCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAGGCACCT < 1:186086/80‑1 GCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAGGCACCT > 2:186086/1‑80 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGGCGTTGGCGCAGCT > 2:415669/1‑150 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGCCGTTGGCGCAGCT > 1:770775/1‑150 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCA > 1:52064/1‑116 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCA < 2:52064/116‑1 GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5803215‑5803276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGCCGTTGGCGCAGCT < NC_002947/5803297‑5803150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |