| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5933579 = | 69 (1.150) | 3 (0.050) | 3/230 | NT | 4.8% | coding (454/555 nt) | PP_5201 | hypothetical protein |
| ? | NC_002947 | 5933609 = | 53 (0.920) | coding (424/555 nt) | PP_5201 | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCTGGTGGCCATTTCGCAGGTCCAGGAAGCGCTCGAAGAGTCCGAAGACGGCGAGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5933638‑5933579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgCTTCCTGGACCTGCGAAATGGCCACCAGGTCCTGCAGCACTTCCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCA > NC_002947/5933609‑5933754 ACCTGGTGGCCATTTCGCAGGTCCAGGAAGCGCTCGAAGAGTCCGAAGACGGCGAGAGCGCTTCCTGGACCTGCGAAATGG < 1:1045377/81‑1ACCTGGTGGCCATTTCGCAGGTCCAGGAAGCGCTCGAAGAGTCCGAAGACGGCGAGAGCGCTTCCTGGACCTGCGAAATGG > 2:1045377/1‑81 AGGAAGCGCTCGAAGAGTCCGAAGACGGCGAGAGCGCTTCCTGGACCTGCGAAATGGCCACCAGGTCCTGCAGCACTTCCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACT > 2:383761/1‑150 GAGCGCTTCCTGGACCTGCGAAATGGCCACCAGGTCCTGCAGCACTTCCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTG < 1:453365/133‑1 GAGCGCTTCCTGGACCTGCGAAATGGCCACCAGGTCCTGCAGCACTTCCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTG > 2:453365/1‑133 AGCGCTTCCTGGACCTGCGAAATGGCCACCAGGTCCTGCAGCACTTCCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCA < 1:416387/150‑1 ACCTGGTGGCCATTTCGCAGGTCCAGGAAGCGCTCGAAGAGTCCGAAGACGGCGAGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5933638‑5933579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgCTTCCTGGACCTGCGAAATGGCCACCAGGTCCTGCAGCACTTCCTTGGCCTCGTCGGACAAGTCCTTCCCGCCAGCGTTCAGGCCGAAACCGGTCACGAAGCCTTGGCACCACTGGCCCAGCGCGGTGGCGCGGTCGCTCAGTGCA > NC_002947/5933609‑5933754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |