| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6055974 = | 65 (1.090) | 4 (0.070) | 4/230 | NT | 6.2% | coding (45/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | 6056005 = | 59 (1.030) | coding (76/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
GACGATGTTTTCGCCGACCGGGGTCAGGCGTACTGCGCTTTTGCTGCGCTCGAAGATCAGAACGCCAAGCTCGTCCTCGAGCTTCTTCACACCGACCGACAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056124‑6055974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgtCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGC > NC_002947/6056005‑6056153 GACGATGTTTTCGCCGACCGGGGTCAGGCGTACTGCGCTTTTGCTGCGCTCGAAGATCAGAACGCCAAGCTCGTCCTCGAGCTTCTTCACACCGACCGACAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTG < 1:333354/150‑1GACGATGTTTTCGCCGACCGGGGTCAGGCGTACTGCGCTTTTGCTGCGCTCGAAGATCAGAACGCCAAGCTCGTCCTCGAGCTTCTTCACACCGACCGACAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTG > 2:1181793/1‑150GACGATGTTTTCGCCGACCGGGGTCAGGCGTACTGCGCTTTTGCTGCGCTCGAAGATCAGAACGCCAAGCTCGTCCTCGAGCTTCTTCACACCGACCGACAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTG > 2:333354/1‑150 ACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAAC > 1:1567115/1‑150 GTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAG > 1:408796/1‑85 GTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAG < 2:408796/85‑1 CAGCGCTCGGCGGCATGGCCGAAGTGCTGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTC < 2:1567115/150‑1 TGTCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAG > 2:1589779/1‑150 TCACGTTAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGC > 2:683647/1‑150 GACGATGTTTTCGCCGACCGGGGTCAGGCGTACTGCGCTTTTGCTGCGCTCGAAGATCAGAACGCCAAGCTCGTCCTCGAGCTTCTTCACACCGACCGACAGGGTGGGTTGGCTCACGTGACAGCGCTCGGCGGCATGGCCGAAGTGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056124‑6055974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgtCACGTGAGCCAACCCACCCTGTCGGTCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGC > NC_002947/6056005‑6056153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |