New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 204885360 (1.000)8 (0.160) 7/206 NT 11.9% intergenic (+49/+90) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
?NC_002947 = 2048910 67 (1.300)intergenic (+106/+33) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein

GGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCA  >  NC_002947/2048705‑2049002
                                                                                                                                                    |                                                                                                                                                     
ggCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGt                                                                                                                                                      >  1:47487/1‑150 (MQ=255)
 gcgcAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTACAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTg                                                                                                                                                     >  2:876624/1‑150 (MQ=255)
   gcagcaGGGCGGGTTCGGCGTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGcc                                                                                                                                                   >  1:951370/1‑150 (MQ=255)
     agcagGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCcg                                                                                                                                                 >  1:786854/1‑150 (MQ=255)
          ggCGGGTTGGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAac                                                                                                                                            <  2:8492/150‑1 (MQ=255)
             gggTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACg                                                                                                                                         <  2:786854/150‑1 (MQ=255)
                    aCCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAg                                                                                                                                  >  2:98885/1‑150 (MQ=255)
                           aGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGc                                                                                                                           >  1:465645/1‑150 (MQ=255)
                               tACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAac                                                                                                                       >  2:416329/1‑150 (MQ=255)
                                 cccGGCGGTAAGGGAATGGCTGGAGCGGGTCAGCAGACACCCGGGGCATGTGACGATGGTGGGAAGAAAACCGACCTGTTTTTCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGGGAACACGGGCGCAGCGCGTGCCAacaa                                                                                                                     >  2:95673/1‑148 (MQ=38)
                                  ccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCAC                                                                                                                    >  2:271289‑M1/1‑150 (MQ=255)
                                  ccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCAC                                                                                                                    >  1:640990‑M1/1‑150 (MQ=255)
                                        gTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGt                                                                                                              <  2:47487/150‑1 (MQ=255)
                                         tAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGACTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgc                                                                                                             >  1:1200886‑M1/1‑108 (MQ=255)
                                          aaGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcc                                                                                                            >  1:408048‑M1/1‑107 (MQ=255)
                                          aaGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCACAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGc                                                                                                            <  2:1427278/150‑1 (MQ=255)
                                            gggCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCt                                                                                                          >  1:1469854/1‑150 (MQ=255)
                                              gactggctggAGCGGGTCAGCAGCCCCCCGCGGCATGTGCCGATGGGGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCCAACAAGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGc                                                                                                        <  1:794154/148‑1 (MQ=255)
                                               ccTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGc                                                                                                            <  1:250422/145‑1 (MQ=255)
                                               ccTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGc                                                                                                            >  2:250422/1‑145 (MQ=255)
                                                   gctggAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTcgc                                                                                                   >  1:98885‑M2/1‑147 (MQ=255)
                                                    ctggAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTcgcg                                                                                                  >  2:1122596‑M2/1‑146 (MQ=255)
                                                     tggAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTcgcgg                                                                                                 >  2:1260546‑M2/1‑145 (MQ=255)
                                                      ggAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCggg                                                                                                >  2:1524737/1‑150 (MQ=255)
                                                       gAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGtgcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgg                                                                                                 >  2:1608948‑M1/1‑94 (MQ=255)
                                                       gAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGtgcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgg                                                                                                 <  1:1608948‑M1/148‑55 (MQ=255)
                                                         gCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTc                                                                                             >  1:416329‑M2/1‑149 (MQ=255)
                                                         gCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTc                                                                                             <  1:1142038‑M2/150‑2 (MQ=255)
                                                           gggTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcgg                                                                                                 <  2:486946‑M1/144‑16 (MQ=255)
                                                           gggTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcgg                                                                                                 >  1:486946‑M1/1‑129 (MQ=255)
                                                           gggTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGACTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgc                                                                                           <  2:1200886‑M1/150‑61 (MQ=255)
                                                            ggTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgaggacacgcc                                                                                          <  2:408048‑M1/150‑62 (MQ=255)
                                                            ggTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTcgcc                                                                                          >  2:450968‑M2/1‑146 (MQ=255)
                                                            ggTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGGTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTcgcc                                                                                          <  1:450968‑M2/150‑5 (MQ=255)
                                                             gTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTcgccc                                                                                         <  1:988058‑M2/150‑6 (MQ=255)
                                                              tCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGcc                                                                                                           >  2:333371/1‑131 (MQ=255)
                                                              tCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGcc                                                                                                           <  1:333371/131‑1 (MQ=255)
                                                                    gcCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTcgcccgctccca                                                                                  >  1:271289‑M2/1‑138 (MQ=255)
                                                                     ccACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCACGAACACGGGCGCAGCCCGt                                                                                                                             <  2:274680/106‑1 (MQ=255)
                                                                     ccACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCACGAACACGGGCGCAGCCCGt                                                                                                                             >  1:274680/1‑106 (MQ=255)
                                                                           gcgGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGa                                                                           <  2:988058/150‑1 (MQ=255)
                                                                             ggCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATc                                                                         <  2:465645/150‑1 (MQ=255)
                                                                               cATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTg                                                                       <  1:419587/150‑1 (MQ=255)
                                                                                 tgtgCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCa                                                                     <  2:640990/150‑1 (MQ=255)
                                                                                 tgtgCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCa                                                                     <  1:27155/150‑1 (MQ=255)
                                                                                     ccGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGAAGCAGGCACcgcggtggttggcacg                                                                                      >  2:706465‑M2/1‑113 (MQ=255)
                                                                                     ccGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGAAGCAGGCACcgcggtggttggcacg                                                                                      <  1:706465‑M2/129‑17 (MQ=255)
                                                                                      cGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcggtggtt                                                                                            <  2:1618916‑M1/122‑21 (MQ=255)
                                                                                      cGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcggtggtt                                                                                            >  1:1618916‑M1/1‑102 (MQ=255)
                                                                                      cGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcggtggtt                                                                                            <  2:383010‑M1/122‑21 (MQ=255)
                                                                                      cGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcggtggtt                                                                                            >  1:383010‑M1/1‑102 (MQ=255)
                                                                                      cGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgt                                                                 <  1:752661/149‑1 (MQ=255)
                                                                                      cGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgt                                                                 >  2:752661/1‑149 (MQ=255)
                                                                                       gATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTGGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtca                                                               >  1:1365403/1‑150 (MQ=255)
                                                                                                 tGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATggc                                                     >  1:210821/1‑150 (MQ=255)
                                                                                                   aaaaCCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGc                                                                                                            >  2:1032922/1‑93 (MQ=255)
                                                                                                   aaaaCCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGc                                                                                                            <  1:1032922/93‑1 (MQ=255)
                                                                                                   aaaaCCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATggcgg                                                   >  2:141443/1‑150 (MQ=255)
                                                                                                     aaCCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgg                                                                                                 >  2:605942‑M1/1‑48 (MQ=255)
                                                                                                     aaCCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgg                                                                                                 <  1:605942‑M1/102‑55 (MQ=255)
                                                                                                      aCCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCaa                                                >  1:985150/1‑150 (MQ=255)
                                                                                                        cGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagt                                                             <  2:1323188/135‑1 (MQ=255)
                                                                                                        cGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagt                                                             >  1:1323188/1‑135 (MQ=255)
                                                                                                          aCCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCg                                            >  1:1375026/1‑150 (MQ=255)
                                                                                                          aCCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCg                                            >  1:1375224/1‑150 (MQ=255)
                                                                                                           ccTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGAt                                                        <  2:1117591/137‑1 (MQ=255)
                                                                                                           ccTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGAt                                                        >  1:1117591/1‑137 (MQ=255)
                                                                                                            cTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCt                                          >  2:1322994/1‑150 (MQ=255)
                                                                                                             tGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAaca                                                                                                                                           >  1:375886/1‑52 (MQ=255)
                                                                                                             tGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAaca                                                                                                                                           <  2:375886/52‑1 (MQ=255)
                                                                                                                   ccAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAg                                   <  2:985150/150‑1 (MQ=255)
                                                                                                                     aGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagt                                                             <  2:1067630/122‑1 (MQ=255)
                                                                                                                     aGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagt                                                             >  1:1067630/1‑122 (MQ=255)
                                                                                                                              cgcAATCCTTGTGGGAGCGGGCGTGCCCGCGAACAAGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCgatga                        <  2:1365403/150‑1 (MQ=255)
                                                                                                                               gcAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCgatgat                       >  2:867269/1‑150 (MQ=255)
                                                                                                                                cAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGAtt                      >  2:230484/1‑150 (MQ=255)
                                                                                                                                     cTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCtt                 >  1:1625433/1‑150 (MQ=255)
                                                                                                                                     cTTGTGGGAGCGGGCGTGCCCGAGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGACAGTTCCCACAAGGGGCCGGAAACGTTGTCCATATGCCTTCAGATCGCCCATCCAGGTAAGCGATGATTGCCtt                 <  1:283860/150‑1 (MQ=16)
                                                                                                                                      ttGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTg                <  2:1469854/150‑1 (MQ=255)
                                                                                                                                      ttGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTg                <  1:548918/150‑1 (MQ=255)
                                                                                                                                      ttGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCGCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTg                <  1:712097/150‑1 (MQ=255)
                                                                                                                                      ttGTGGGAGCGGGCGCGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTCCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTg                <  2:366478/150‑1 (MQ=255)
                                                                                                                                        gtgGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGa              <  2:601205/150‑1 (MQ=255)
                                                                                                                                        gtgGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGa              <  1:230484/150‑1 (MQ=255)
                                                                                                                                         tgGGAGCGGGCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggattgcgcaagcgcctggaaaacaggtcggttttcagcccaccatcggcacatgccgcgggtggc             >  1:271289‑M1/1‑12 (MQ=255)
                                                                                                                                         tgGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAacca                                                                                                                     >  1:285003/1‑46 (MQ=255)
                                                                                                                                         tgGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAacca                                                                                                                     <  2:285003/46‑1 (MQ=255)
                                                                                                                                         tgGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATggcg                                                    <  2:370298/111‑1 (MQ=255)
                                                                                                                                         tgGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATggcg                                                    >  1:370298/1‑111 (MQ=255)
                                                                                                                                            gAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcg                                                                                                  >  1:818314‑M1/1‑48 (MQ=255)
                                                                                                                                            gAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGaagcaggcaccgcg                                                                                                  <  2:818314‑M1/62‑15 (MQ=255)
                                                                                                                                              gCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGa              <  1:286018/144‑1 (MQ=255)
                                                                                                                                              gCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGa              >  2:286018/1‑144 (MQ=255)
                                                                                                                                                gggCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggattgcgcaagcgcctggaaaacaggtcggttttcagcccaccatcggcacatgccgcgggtggctgctgac      <  1:988058‑M1/150‑146 (MQ=255)
                                                                                                                                                 ggCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggattgcgcaagcgcctggaaaccaggtcggttttcagcccaccatcggcacatgccgcgggtggctgctgacc     <  1:450968‑M1/150‑147 (MQ=255)
                                                                                                                                                 ggCGagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggattgcgcaagcgcctggaaaacaggtcggttttcagcccaccatcggcacatgccgcgggtggctgctgacc     >  2:450968‑M1/1‑4 (MQ=255)
                                                                                                                                                 ggCGTGTCCTCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTcgcccgctcccacaaggattgcgcaagcgcctggaaaacaggtcggttttcagcccaccatcggcacatgccgcgggtggctgctgacc     <  2:408048‑M2/150‑90 (MQ=255)
                                                                                                                                                  gCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTcgcccgctcccacaaggattgcgcaagcgcctggaaaacaggtcggttttcagtccaccatcggcacatgccgcgggtggctgctgaccc    <  2:1200886‑M2/150‑91 (MQ=255)
                                                                                                                                                    gagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggattgcgcaagcgcctggaaaacaggtcggttttcagcccaccatcggcacatgccgcgggtggctgctgacccgc  <  1:1142038‑M1/150‑150 (MQ=255)
                                                                                                                                                    gagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggattgcgcaagcgcctggaaaacaggtcggttttcagcccaccatcggcacatgccgcgggtggctgctgacccgc  >  1:416329‑M1/1‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCA  >  NC_002947/2048705‑2049002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.