| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2557498 = | 56 (0.940) | 4 (0.070) | 4/230 | NT | 7.0% | intergenic (‑145/‑286) | PP_2241/fepA | MFS transporter/ferric enterobactin transport system outer membrane subunit |
| ? | NC_002947 | 2557535 = | 53 (0.920) | intergenic (‑182/‑249) | PP_2241/fepA | MFS transporter/ferric enterobactin transport system outer membrane subunit | |||||
ATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATGTAA > NC_002947/2557352‑2557634 | gtaaatatagagaatcgcaaatgcgagtaaatcttatttacgaagtttacatgtttgttactgaactttgctgaaccgtgatctttgccacagcgaagcttgtgagccacgccggactgccccctaaatttgataagccttcgcggTCGc < 2:1519144‑M1/4‑1 (MQ=255)aTCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGc > 1:707812/1‑150 (MQ=255) cTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGccc < 1:67294/150‑1 (MQ=255) tagagaatcgcaaatgcgagtaaatcttatttacgaagtttacatgtttgttactgaactttgctgaaccgtgatctttgccacagcgaagcttgtgagccacgccggactgccccctaaatttgataagccttcgcggTCGc > 1:894767‑M1/140‑143 (MQ=255) tagagaatcgcaaatgcgagtaaatcttatttacgaagtttacatgtttgttactgaactttgctgaaccgtgatctttgccacagcgaagcttgtgagccacgccggactgccccctaaatttgataagccttcgcggTCGc < 2:894767‑M1/4‑1 (MQ=255) ccGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAGACTTTCCATAAATGCAGGGGTGGTTGTTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCgg < 2:409593/150‑1 (MQ=255) cGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCggg > 2:478507/1‑150 (MQ=255) gCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGt > 1:222872/1‑150 (MQ=255) gCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGCGt > 1:965322/1‑150 (MQ=255) gTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGc < 2:336251/150‑1 (MQ=255) gTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCt > 2:141571/1‑150 (MQ=255) gAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCt < 2:31425/144‑1 (MQ=255) gAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCt > 1:31425/1‑144 (MQ=255) aaaCTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAg < 2:707812/150‑1 (MQ=255) tAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGAcc > 1:1061657/1‑150 (MQ=255) gCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGaa < 2:222872/150‑1 (MQ=255) ccTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAg < 1:478507/150‑1 (MQ=255) ccTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAg < 1:421757/150‑1 (MQ=255) acaGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATc > 2:496627/1‑150 (MQ=255) caGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCa > 1:580667/1‑150 (MQ=255) ggATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCaaa < 1:496627/150‑1 (MQ=255) gTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTc > 1:19406/1‑80 (MQ=255) gTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTc < 2:19406/80‑1 (MQ=255) gTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGTGGccggtcgg > 1:819925/1‑143 (MQ=255) tGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGc < 1:141571/150‑1 (MQ=255) tgaaccgtgatctttgccacagcgaagcttgtgagccacgccggactgccccctaaatttgataagccttcgcggTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGc > 2:1424793‑M1/76‑110 (MQ=255) tgaaccgtgatctttgccacagcgaagcttgtgagccacgccggactgccccctaaatttgataagccttcgcggTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGc < 1:1424793‑M1/35‑1 (MQ=255) gcagcaACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCt > 1:1144483/1‑150 (MQ=255) cagcaACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTc > 2:97383/1‑150 (MQ=255) agcaACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTca < 2:1607140/150‑1 (MQ=255) aCAGCCGGTGGAGATTACGAAACATTCCATAAATGCAGGGGTGGTTATTCAGTCAGAGAGTGTCTTCGCCCGGTTCGAGTGTAAAACCGCTACTACAGGAGAACACGAAGGGATAGCAAATTAAGGAGGCAGTCCGGCGTGGCTCACAAg > 2:266499/1‑150 (MQ=255) gCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCtt < 1:97383/150‑1 (MQ=255) tgtgGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAgg < 2:1405074/120‑1 (MQ=255) tgtgGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAgg > 1:1405074/1‑120 (MQ=255) ccacagcgaagcttgtgagccacgccggactgccccctaaatttgataagccttcgcggTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGa > 1:1447884‑M1/60‑96 (MQ=255) ccacagcgaagcttgtgagccacgccggactgccccctaaatttgataagccttcgcggTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGa < 2:1447884‑M1/37‑1 (MQ=255) gaTGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGt < 1:1475768/128‑1 (MQ=255) gaTGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGt > 2:1475768/1‑128 (MQ=255) aTGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAAcc > 2:174840/1‑74 (MQ=255) aTGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAAcc < 1:174840/74‑1 (MQ=255) aCGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTc < 1:1369697/118‑1 (MQ=255) aCGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTc > 2:1369697/1‑118 (MQ=255) gAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCg < 1:898912/137‑1 (MQ=255) gAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCg > 2:898912/1‑137 (MQ=255) gAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGACGTGGCTCACAAGCTTAAATGAGGCAAAGaa > 2:1351022/1‑149 (MQ=255) cTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGt < 1:624433/51‑1 (MQ=255) cTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGt > 2:624433/1‑51 (MQ=255) tttCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACgg > 2:1312283/1‑150 (MQ=255) aTAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAg > 1:13845/1‑150 (MQ=255) tAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAg < 2:1527049/96‑1 (MQ=255) tAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAg > 1:1527049/1‑96 (MQ=255) tGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAg > 1:1563417/1‑150 (MQ=255) ggggTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCCGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCa < 2:1061657/150‑1 (MQ=255) ggggTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAg > 2:909832/1‑141 (MQ=255) ggggTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAg < 1:909832/141‑1 (MQ=255) ggggTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCa < 2:13845/150‑1 (MQ=255) gggTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAg > 1:968478/1‑150 (MQ=255) gtggtTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTa > 1:1226889/1‑150 (MQ=255) ntCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTaacaaaca > 2:863701/2‑150 (MQ=255) agTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCa < 1:537996/119‑1 (MQ=255) agTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCa > 2:537996/2‑120 (MQ=255) gTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAACAAAGTTCAGTAACAAACATGTa > 1:1610656/1‑150 (MQ=255) gTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATAACGGTTGAACAAAGTTCAGTAACAAACATGTa > 2:1198247/1‑150 (MQ=255) tCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTAAGCAAAGTTCAGTAACAAACATGTaa > 1:746164/1‑150 (MQ=255) gagagTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAggggg < 2:105823/74‑1 (MQ=255) gagagTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAggggg > 1:105823/1‑74 (MQ=255) | ATCTGGTCTCTCCGCAGCGTTGTACGTCGAAACTGTAGATGCCTGCACACAGGATGCAAACTGGATAGGTGGATAGCAGCAACAGCCTGTGGAGATGACGAAACTTTCCATAAATGCAGGGGTGGTTATTCCGTCAGAGAGTGTCTTCGCCCGTTTCGCGGGTAAACCCGCTCCTACAGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATGTAA > NC_002947/2557352‑2557634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |