New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4353694 =	47 (0.790)	3 (0.050)	3/238	NT	6.0%	coding (776/1086 nt)	yrpB	2‑nitropropane dioxygenase
	?	NC_002947	4353720 =	48 (0.810)					coding (802/1086 nt)	yrpB	2‑nitropropane dioxygenase

GGCCGATGCCGTCGGCGTGCCGGTGATTGCCGCCGGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGC  >  NC_002947/4353545‑4353841                                                                                                                                                      |                                                                                                                                                      tcggtgatcgcccgtaaaggcatcaatgccccgcccgccagcgggaagcgcggtgcaagctcgctcatcggccccagctcgcgcatgaggcgattgttgatgccgcgcgccgggcggccggtgaacaggttggtcagggcggtgtcgctg                                                                                                                                                       >  2:443864‑M1/150‑150 (MQ=255)         ccGTCGGCGTGCCGGTGATTGCCGCCGGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑gcgc                                                                                                                                             <  1:226379/150‑1 (MQ=255)           gTCGGCGTGCCGGTGATTGCCGCCGGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTg                                                                                                                                           <  2:517791/150‑1 (MQ=255)             cGGCGTGCCGGTGATTGCCGCCGGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGa                                                                                                                                         <  1:1315513/150‑1 (MQ=255)                             gccgccGGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGc                                                                                                                         >  1:194551/1‑150 (MQ=255)                              ccgccgGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCa                                                                                                                           <  1:1201418/147‑1 (MQ=255)                              ccgccgGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCa                                                                                                                           >  2:1201418/1‑147 (MQ=255)                               cgccgGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGa                                                                                                                       <  1:263783/150‑1 (MQ=255)                               cgccgGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGa                                                                                                                       <  2:481317/150‑1 (MQ=255)                                  cgGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGacac                                                                                                                    <  2:333142/150‑1 (MQ=255)                                        tATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTNGGCGGTGCAGACCAGCACGGCTTACCTGTTCTGCCCCGAGGCAAAGGTGTCGCCAGCGCATCACCA‑G‑GCGCTGGACAGCGCGCCTGGCAGCGACAACGCCCt                                                                                                              >  1:560096/1‑150 (MQ=255)                                                accaccGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAgcgc                                                                                                                                   <  1:450893/121‑1 (MQ=255)                                                accaccGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAgcgc                                                                                                                                   >  2:450893/1‑121 (MQ=255)                                                  caccGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCCAGGTGTCGCTAGCGCATCGCCA‑T‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTg                                                                                                    >  1:604000/1‑150 (MQ=255)                                                  caccGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTg                                                                                                    <  2:608698/150‑1 (MQ=255)                                                     cgcgGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTc                                                                                                 <  1:1126468/150‑1 (MQ=255)                                                         ggCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCg                                                                                             <  1:453119/150‑1 (MQ=255)                                                         ggCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCg                                                                                             >  1:1116988/1‑150 (MQ=255)                                                              ctGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTCACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGgccgc                                                                                        >  2:1126096/2‑150 (MQ=255)                                                                 gcggcACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCg                                                                                     >  1:566679/1‑150 (MQ=255)                                                                          gCCCTGGGTGCGTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGc                                                                            >  2:736353/1‑150 (MQ=255)                                                                             cTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATc                                                                         >  2:662644/1‑150 (MQ=255)                                                                                   gCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAAt                                                                   >  1:1394076/1‑150 (MQ=255)                                                                                     cTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCg                                                                 >  1:577395/1‑150 (MQ=255)                                                                                      tCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGc                                                                >  2:99083/1‑150 (MQ=255)                                                                                               cAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATgcgc                                                       >  1:1272497/1‑150 (MQ=255)                                                                                                    cGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCt                                                  >  1:725443/1‑150 (MQ=255)                                                                                                       cACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTggg                                               >  2:1020234/1‑150 (MQ=255)                                                                                                         cGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCCGCACCTCTGCCCTGCCCATCTGGGTGATTGGCTGTCCGGGGCTCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGc                                             <  1:1020234/150‑1 (MQ=255)                                                                                                         cGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGc                                             <  1:573555/150‑1 (MQ=255)                                                                                                         cGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGc                                             <  1:99083/150‑1 (MQ=255)                                                                                                              tACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATg                                        >  1:1240682/1‑150 (MQ=255)                                                                                                               aCCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCAACGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATga                                       >  1:314560/1‑150 (MQ=255)                                                                                                                 cTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATgagc                                     >  1:971856/1‑150 (MQ=255)                                                                                                                   gTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATgagcga                                   <  2:577395/150‑1 (MQ=255)                                                                                                                          cccGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACCGCGCCCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCa                            >  1:692899/1‑150 (MQ=255)                                                                                                                           ccGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCAc                           >  2:576466/1‑150 (MQ=255)                                                                                                                           ccGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCCCGCCCTGGGCCCGATGCCCGCGCTTCCAc                           >  2:697994/1‑150 (MQ=255)                                                                                                                            cGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCAcc                          <  1:736353/150‑1 (MQ=255)                                                                                                                            aacaggttggtcagggcggtgtcgctGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAg                                                                                                                          >  2:439606‑M1/27‑54 (MQ=255)                                                                                                                            aacaggttggtcagggcggtgtcgctGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAg                                                                                                                          <  1:439606‑M1/28‑1 (MQ=255)                                                                                                                             gAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACcg                         >  2:448599/1‑150 (MQ=255)                                                                                                                              aGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACcgc                        >  2:1648227/1‑150 (MQ=255)                                                                                                                                 gttggtcagggcggtgtcgctGGCATGCGCGCTGTCCAGCGC‑‑CTGGCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCt                     <  1:323525‑M1/129‑1 (MQ=255)                                                                                                                                 ccAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGc                                                   >  1:498467/1‑120 (MQ=255)                                                                                                                                 ccAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGc                                                   <  2:498467/120‑1 (MQ=255)                                                                                                                                   aaGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTc                   >  1:427560/1‑150 (MQ=255)                                                                                                                                    aGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTcc                  <  1:968254/150‑1 (MQ=255)                                                                                                                                          cGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTgg            <  1:1126096/150‑1 (MQ=255)                                                                                                                                           gCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTggc           <  2:1431950/150‑1 (MQ=255)                                                                                                                                             cAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTggcgg         <  1:576466/150‑1 (MQ=255)                                                                                                                                                   aTCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCgggg   >  1:1341407/1‑150 (MQ=255)                                                                                                                                                    tCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGc  <  1:1648227/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GGCCGATGCCGTCGGCGTGCCGGTGATTGCCGCCGGTGGTATCGGCGACCACCGCGGGCTGTTGGCGGCACTGGCCCTGGGTGCCTCGGCAGTGCAGATCGGCACGGCTTACCTGTTCTGCCCCGAGGCCAAGGTGTCGCCAGCGCATCGCCA‑G‑GCGCTGGACAGCGCGCCTGCCAGCGACACCGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGCGGCATCAACAATCGCCTCATGCGCGAGCTGGGGCCGATGAGCGAGCTTGCACCGCGCTTCCCGCTGGCGGGCGGGGC  >  NC_002947/4353545‑4353841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.