| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5222952 = | 0 (0.000) | 12 (0.210) +TGAT |
12/232 | NT | 100% | intergenic (‑315/+64) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase |
| ? | NC_002947 | 5545128 = | NA (NA) | intergenic (‑220/+657) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
AGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGG > NC_002947/5222803‑5223092 | gttgaacaaggtcttgaggagttcgaagccagaagccaagaccggcaggtccgggctttgcttcgcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcac < 2:777284‑M1/1‑1 (MQ=255) gagttcgaagccagaagccaagaccggcaggtccgggctttgcttcgcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCCCAGCCCGGAAGGGCTgg > 2:1131223‑M1/132‑150 (MQ=255) agttcgaagccagaagccaagaccggcaggtccgggctttgcttcgcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCCCAGCCCGGAAGGGCTggg > 2:1537833‑M1/131‑150 (MQ=255) agaagccaagaccggcaggtccgggctttgcttcgcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgctgtgcgacagCGCAGCCCGGAAGGGCTGGGTGATCTCtcat < 1:146898‑M1/31‑1 (MQ=255) gaagccaagaccggcaggtccgggctttgcttcgcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCCCAGCCCGGAAg < 1:1469375‑M1/13‑1 (MQ=255) gaagccaagaccggcaggtccgggctttgcttcgcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCCCAGCCCGGAAg > 2:1469375‑M1/119‑131 (MQ=255) ccaagaccggcaggtccgggctttgcttcgcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgctgtgcgacagCGCAGCCCGGAAGGGCTGGGTGATCTCTCATcaaac > 2:146898‑M1/115‑150 (MQ=255) cgggcttggcgaagcaaagcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCGCAGCCCGGAAGGGCTGGGTGATCTCtcatc > 2:714785‑M1/99‑130 (MQ=255) ggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCGCAGCCCGGAAGGGCTGGGTGAtc < 1:20353‑M1/25‑1 (MQ=255) ggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCGCAGCCCGGAAGGGCTGGGTGAtc > 2:20353‑M1/70‑94 (MQ=255) ggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCCCAGCCCGGAAGGGCTGGGt < 1:1070503‑M1/21‑1 (MQ=255) ggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcaCCCAGCCCGGAAGGGCTGGGt > 2:1070503‑M1/55‑75 (MQ=255) gatgagagatcaCCCAGCCCTTCCGGGCTGCGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCg > 1:714785‑M1/13‑130 (MQ=255) gagagatcaCCCAGCCCTTCCGGGCTGCGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTgg < 1:275861‑M1/141‑1 (MQ=255) | AGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGG > NC_002947/5222803‑5223092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |