| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5382446 = | 11 (0.180) | 3 (0.070) | 3/170 | NT | 27.5% | intergenic (+18/+115) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | 5382544 = | 8 (0.190) | intergenic (+116/+17) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
AAGCACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCG > NC_002947/5382297‑5382533 | attgtcgagggcagggcggaggatgcgcgggaggtgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtac > 1:1110935‑M1/150‑150 (MQ=255) ttgtcgagggcagggcggaggatgcgcgggaggtgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtacc > 1:362798‑M1/149‑150 (MQ=255) aGCACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCC > 1:190523‑M1/1‑150 (MQ=255) tcgagggcagggcggaggatgcgcgggaggtgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGc < 1:212715‑M1/5‑1 (MQ=255) tcgagggcagggcggaggatgcgcgggaggtgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGc > 2:582833‑M1/146‑150 (MQ=255) cTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCT > 1:1376945‑M1/1‑150 (MQ=255) gggcagggcggaggatgcgcgggaggtgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagtttaccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCctct < 1:1263647‑M1/9‑1 (MQ=255) aaGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGC < 2:190523‑M1/150‑1 (MQ=255) gTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGG < 1:644879‑M1/150‑1 (MQ=255) ggcGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGAAACAAGAGCAAAGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGG < 1:445928‑M1/149‑1 (MQ=255) gCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGC < 2:1376945‑M1/150‑1 (MQ=255) aaTCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGC < 2:855347‑M1/150‑1 (MQ=255) tCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGC > 2:399053‑M1/1‑148 (MQ=255) tCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGC < 1:399053‑M1/148‑1 (MQ=255) cGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCG < 2:494451‑M1/150‑1 (MQ=255) gCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGC > 2:1449704‑M1/1‑150 (MQ=255) gcgggaggtgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTc > 2:31618‑M1/124‑150 (MQ=255) tgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGa > 1:517638‑M1/116‑150 (MQ=255) tgtccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGa > 2:410511‑M1/116‑150 (MQ=255) tgtccagccggcacattttgtatgtgcaggaggtgccgtagcaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGa > 1:15374‑M1/116‑150 (MQ=255) tccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTc > 1:1395078‑M1/114‑124 (MQ=255) tccagccggcacattttgtatgtgcaggaggtgctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTc < 2:1395078‑M1/11‑1 (MQ=255) ggcaagAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAAt < 2:1218908/150‑1 (MQ=255) aagGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCAcc < 2:619987/150‑1 (MQ=255) aaTTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTCACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGAt < 2:1182355/150‑1 (MQ=255) aaTTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGAt < 1:119547/150‑1 (MQ=255) ttCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggctt > 1:1288255‑M1/1‑136 (MQ=255) gACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAg > 2:732306/1‑150 (MQ=255) aGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCg < 1:1449704/150‑1 (MQ=255) gcgACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGgcg > 1:1022147/1‑150 (MQ=255) acacCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgcca < 2:1161090‑M1/150‑28 (MQ=255) aTGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGC > 2:915268‑M1/1‑88 (MQ=255) aTGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGC < 1:915268‑M1/88‑1 (MQ=255) gctgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaTCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGTAATGGCACCAGATTCAAGCCCGGCGCCTATTCtgt > 2:239552‑M1/82‑150 (MQ=255) gcgcGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgt < 2:1288255‑M1/150‑35 (MQ=255) gcgcGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgt > 2:1022147‑M2/1‑144 (MQ=255) cgcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtg > 2:521060‑M2/1‑143 (MQ=255) gAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA > 1:1642948‑M1/1‑109 (MQ=255) gAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA < 2:1642948‑M1/109‑1 (MQ=255) gcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgg > 1:732306‑M2/1‑136 (MQ=255) tCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt < 2:818700‑M2/149‑19 (MQ=255) tCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 1:818700‑M2/1‑131 (MQ=255) acgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgtg < 2:1211867‑M1/70‑1 (MQ=255) acgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgtg > 1:1211867‑M1/68‑137 (MQ=255) cAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgtggga > 1:1266448‑M1/1‑101 (MQ=255) cAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgtggga < 2:1266448‑M1/139‑39 (MQ=255) cAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 1:664093‑M2/1‑129 (MQ=255) cAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt < 2:664093‑M2/147‑19 (MQ=255) ccGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATgg < 2:1571990/102‑1 (MQ=255) ccGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATgg > 1:1571990/1‑102 (MQ=255) cgcgAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcg > 1:1356965‑M2/1‑125 (MQ=255) gCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgt > 1:83440‑M2/1‑114 (MQ=255) gCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgt < 2:83440‑M2/120‑7 (MQ=255) gggCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtg > 2:1066532‑M2/1‑112 (MQ=255) gggCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtg < 1:1066532‑M2/119‑8 (MQ=255) gggCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgt < 1:775127‑M1/102‑35 (MQ=255) gggCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAtaggcgccgggcttgaatctggtgccattcctgt > 2:775127‑M1/1‑68 (MQ=255) gagTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGgcgc < 1:557786/83‑1 (MQ=255) gagTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGgcgc > 2:557786/1‑83 (MQ=255) | AAGCACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCG > NC_002947/5382297‑5382533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |