| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 401690 | 61 (1.020) | 5 (0.120) +GTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCAT |
5/164 | NT | 16.0% | intergenic (+214/+215) | PP_0334/PP_0335 | transposase/glutathione S‑transferase family protein |
| ? | NC_002947 | = 5033278 | 16 (0.270) | intergenic (+395/‑15) | PP_4435/PP_4437 | hypothetical protein/transposase | |||||
CCGTGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCA > NC_002947/5033129‑5033364 | ccGTGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTa < 1:1492088/150‑1 (MQ=255) cGTGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTa > 1:1091207/1‑149 (MQ=255) cGTGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTa < 2:1091207/149‑1 (MQ=255) gTGGAATGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATc < 1:644382/150‑1 (MQ=255) ggACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGTGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAatgc > 1:494020‑M2/1‑146 (MQ=255) cTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAg < 1:451159/150‑1 (MQ=255) ggCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGa < 1:1576058/150‑1 (MQ=255) aaCCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTa > 2:198331/1‑150 (MQ=255) ccGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTc > 1:593888/1‑146 (MQ=255) ccGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTc < 2:593888/146‑1 (MQ=255) cGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATgc > 1:222178/1‑150 (MQ=255) cGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGctct > 1:391229/1‑150 (MQ=255) gCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGCTGCTCTTTCGGTTTTAGCAACCTGACTCGATCACCCTTATCGCCAGGATTTCTATGCGCTAACAAAGCTCtt > 1:1427104/1‑150 (MQ=17) gCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCg < 1:367731/150‑1 (MQ=255) gAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTAt < 1:1420025/113‑1 (MQ=40) gAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTAt > 2:1420025/1‑113 (MQ=40) aTCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCa < 1:1509928/150‑1 (MQ=35) cACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAgg < 1:480974/150‑1 (MQ=34) ccATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTc > 1:808488/1‑150 (MQ=32) ccATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTc < 2:222178/150‑1 (MQ=32) cATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCg > 2:505577/1‑150 (MQ=32) ttCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAatgctggagttcggaaggtgagttcgccggacgcttaccataggaacccggttgcatctatgtatcaggcctattcgaggaagctt < 2:1017766‑M2/150‑87 (MQ=255) ttAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAatgctggagttcggaaggtgagttcgccggacgcttaccataggaacccggtt < 2:937915‑M2/102‑54 (MQ=255) ttAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAatgctggagttcggaaggtgagttcgccggacgcttaccataggaacccggtt > 1:937915‑M2/1‑49 (MQ=255) aaGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCCATCGCCCTTAatgctggagttcggaaggtgagttcgccggacgcttaccataggaacccggttgcatctatgtatcaggcct > 1:936608‑M2/1‑47 (MQ=255) aaGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCCATCGCCCTTAatgctggagttcggaaggtgagttcgccggacgcttaccataggaacccggttgcatctatgtatcaggcct < 2:936608‑M2/119‑73 (MQ=255) aatgctggagttcggaaggtgagttcgccggacgcttaccataggaacccggttgcatcta < 2:1069748‑M2/61‑61 (MQ=255) aatgctggagttcggaaggtgagttcgccggacgcttaccataggaacccggttgcatcta > 1:1069748‑M2/1‑1 (MQ=255) | CCGTGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCA > NC_002947/5033129‑5033364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |