New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1102893	36 (0.600)	5 (0.090)	4/224	NT	11.7%	intergenic (+27/‑91)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
	?	NC_002947	= 1102923	42 (0.750)					intergenic (+57/‑61)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein

TGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGT  >  NC_002947/1102779‑1103071                                                                                                                                                 |                                                                                                                                                     tGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgagg                                                                                                                                                 >  2:1614390‑M2/1‑145 (MQ=255)  ggCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggg                                                                                                                                                >  1:631060‑M2/1‑144 (MQ=255)   gCAAGGCGTGCGAGGTGCGTGGCATGCGTGATGATATGCGGGAAATTGCCGAGGTCTATGATGTCGATGAAGTGCTGGCAAGCTAGTGGGCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCGTCGCAGGcgagggg                                                                                                                                               <  2:890290‑M2/150‑8 (MQ=255)   gCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgcgggg                                                                                                                                               <  2:888332‑M2/150‑8 (MQ=255)   gCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgagggg                                                                                                                                               >  1:769139‑M2/1‑143 (MQ=255)     aaGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGGCAGGCACGGATAATGGCCCCTCGGTCAGCGAAGCCTTCCTTGGGCTTCGCAGGcgaggggcc                                                                                                                                             <  2:6231‑M2/150‑10 (MQ=255)            gCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGt                                                                                                                                      <  1:1028281/150‑1 (MQ=255)            gCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGt                                                                                                                                      <  1:899119/150‑1 (MQ=255)             cGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTa                                                                                                                                     <  2:1101042/150‑1 (MQ=255)                  tGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTatgatg                                                                                                                                <  2:641330/150‑1 (MQ=255)                   gCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCACCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGAGAGGGGCTTTTTTGTATGATgg                                                                                                                               >  1:356990/1‑150 (MQ=255)                          aTGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCtttttt                                                                                                                                        >  2:512319/1‑134 (MQ=255)                          aTGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCtttttt                                                                                                                                        <  1:512319/134‑1 (MQ=255)                                gatgatATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTa                                                                                                                                     <  2:907840/131‑1 (MQ=255)                                gatgatATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTa                                                                                                                                     >  1:907840/1‑131 (MQ=255)                                          gggAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGcc                                                                                                        <  2:491090/150‑1 (MQ=255)                                            gAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTACGATGGCCGCCCCGTGCGCATCGGGCGCCGa                                                                                                      <  2:1007928/150‑1 (MQ=255)                                              aaTTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGAtt                                                                                                    <  2:302420/150‑1 (MQ=255)                                                    cGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGtt                                                                                              <  2:1522667/150‑1 (MQ=255)                                                        gTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGa                                                                                            >  2:388122/1‑148 (MQ=255)                                                        gTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGa                                                                                            <  1:388122/148‑1 (MQ=255)                                                           tATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATg                                                                                       >  2:1025905/1‑150 (MQ=255)                                                                       ggagggCTGGGAAGTTAGTGGCCAGGCACGGATGATGGCCCCGCGGTCAGGGAAGCCTTCGTTGGGCTGCGCAGGCGAGGGGCTTTTTGGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGCGCATGCAGGCCGTAGaa                                                                           <  2:561686/145‑1 (MQ=255)                                                                              tGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTaaaa                                                                    >  2:123379/1‑150 (MQ=255)                                                                                 cAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCt                                                                 <  1:1025905/150‑1 (MQ=255)                                                                                  aaGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCtt                                                                <  1:1609966/150‑1 (MQ=255)                                                                                  aaGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCtt                                                                >  2:379369/1‑150 (MQ=255)                                                                                                  aCGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTg                                                <  1:1327701/150‑1 (MQ=255)                                                                                                       tgatgGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCggg                                           <  1:123379/150‑1 (MQ=255)                                                                                                              cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaattt                                                                               <  1:402534‑M2/107‑72 (MQ=255)                                                                                                              cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaattt                                                                               >  2:402534‑M2/1‑36 (MQ=255)                                                                                                              cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTgc                                                                                                                    >  1:423096/1‑70 (MQ=255)                                                                                                              cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTgc                                                                                                                    <  2:423096/70‑1 (MQ=255)                                                                                                              cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCgg                                    <  1:379369/150‑1 (MQ=255)                                                                                                                 tCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaatttcccgcatatcatcaggcatgccacgcccctcgcccgcctttccagt                                 <  2:860337‑M2/150‑118 (MQ=255)                                                                                                                 tCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcg                                                                                      >  2:1279297‑M2/1‑33 (MQ=255)                                                                                                                 tCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcg                                                                                      <  1:1279297‑M2/97‑65 (MQ=255)                                                                                                                    ggcAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGaa                              <  2:1236457/148‑1 (MQ=255)                                                                                                                     tCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAg                             >  2:670648/1‑150 (MQ=255)                                                                                                                       aGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGACGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAg                                                                                           >  1:371205/1‑86 (MQ=255)                                                                                                                       aGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGACGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAg                                                                                           <  2:371205/86‑1 (MQ=255)                                                                                                                         cGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGtt                                         <  2:872691/134‑1 (MQ=255)                                                                                                                         cGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGtt                                         >  1:872691/1‑134 (MQ=255)                                                                                                                          gAATCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTgaa                        <  1:6231/150‑1 (MQ=255)                                                                                                                           aaGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTgaag                       >  1:212386/1‑150 (MQ=255)                                                                                                                               cTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGtt                           >  2:1428706/1‑142 (MQ=255)                                                                                                                               cTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGtt                           <  1:1428706/142‑1 (MQ=255)                                                                                                                                ttCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGaa                                                         <  2:1122451/111‑1 (MQ=255)                                                                                                                                ttCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGaa                                                         >  1:1122451/1‑111 (MQ=255)                                                                                                                                ttCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCg                                     >  1:899230/1‑131 (MQ=255)                                                                                                                                ttCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCg                                     <  2:899230/131‑1 (MQ=255)                                                                                                                                ttCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTgaaggcgaa                  >  2:187477/1‑150 (MQ=255)                                                                                                                                          ttCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAAGCAAAGGCTGCAACt        >  1:1258864/1‑150 (MQ=255)                                                                                                                                               tggCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAg   >  1:1461886/2‑150 (MQ=255)                                                                                                                                                ggCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGt  <  2:1461886/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGT  >  NC_002947/1102779‑1103071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.