New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1392884 =	69 (1.150)	3 (0.070)	4/166	NT	7.7%	intergenic (+48/‑138)	PP_1214/ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
	?	NC_002947	1392984 =	24 (0.580)					intergenic (+148/‑38)	PP_1214/ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC

GGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTGCATCCG  >  NC_002947/1392837‑1393125                                                                                                                                                     |                                                                                                                                              ggTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCCCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGTAGCGGGTTTACCCGCGAAGGGGCCGGCGCa                                                                                                                                             >  1:889783/1‑150 (MQ=255)          gCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTaga                                                                                                                                    <  2:1499455/150‑1 (MQ=255)           cATTTTGTGCCAACTGTGAGCGTTTGATAGCGCCTGTGCCTCCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGGGCAGTCACCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTagag                                                                                                                                   <  2:640641/150‑1 (MQ=37)                 gtgCCAACTCTGAGCGTTTGATAGCGCCTGTGCCCGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGcat                                                                                                                             <  2:603300/150‑1 (MQ=255)                  tgCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGcatc                                                                                                                            >  1:1371958/1‑150 (MQ=255)                  tgCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGcatc                                                                                                                            >  1:396807/1‑150 (MQ=255)                       aCTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTTGTGCAGTACCTGTAGGAGCGCGGTTACTCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCAtttt                                                                                                                       <  1:378792/150‑1 (MQ=255)                                                   GGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa                                                                                           >  2:87404‑M1/1‑150 (MQ=255)                                                    GCCCTTTCGCGGGTAAACCCGATCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAg                                                                                          <  2:318623‑M1/150‑1 (MQ=255)                                                             CGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAcc                                                                                 <  2:1543976‑M1/150‑1 (MQ=255)                                                             CGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAcc                                                                                 >  2:889783‑M1/1‑150 (MQ=255)                                                             CGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACACGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAcc                                                                                 <  1:887281‑M1/150‑1 (MQ=255)                                                              GGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCAtttttt                                                                                                                     <  2:384676‑M1/113‑1 (MQ=255)                                                              GGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCAtttttt                                                                                                                     >  1:384676‑M1/1‑113 (MQ=255)                                                              GGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAccc                                                                                <  1:1152610‑M1/150‑1 (MQ=255)                                                                     CCCGCTCCTACAGGTACTGCACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcg                                                                         <  2:1575760‑M1/150‑1 (MQ=255)                                                                      CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa                                                                                           <  2:65487‑M1/131‑1 (MQ=255)                                                                      CCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa                                                                                           >  1:65487‑M1/1‑131 (MQ=255)                                                                         gctcctacaggtactgcaccacatttgaaatgggcgtaatacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa                                                                                           >  1:776479‑M2/77‑129 (MQ=255)                                                                         gctcctacaggtactgcaccacatttgaaatgggcgtaatacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa                                                                                           <  2:776479‑M2/53‑1 (MQ=255)                                                                               CAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGAGTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCg                                                               <  1:905096‑M1/150‑1 (MQ=255)                                                                               CAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCg                                                               <  2:667829‑M1/150‑1 (MQ=255)                                                                                caggtactgcaccacatttgaaatgggcgtaatacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCg                                                               >  2:961895‑M2/70‑150 (MQ=255)                                                                                     ttACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAgg                                                                                         <  2:721013/118‑1 (MQ=255)                                                                                     ttACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAgg                                                                                         >  1:721013/1‑118 (MQ=255)                                                                                     ttACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc                                                                 >  1:487376/1‑142 (MQ=255)                                                                                     ttACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc                                                                 <  2:487376/142‑1 (MQ=255)                                                                                     ttACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTAtt                                                         <  1:667829/150‑2 (MQ=255)                                                                                        cGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCg                                                      <  2:396807/150‑1 (MQ=255)                                                                                          cc‑cATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg                                                    >  1:1003330/1‑150 (MQ=255)                                                                                               ttttAAATGGGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTAc                                                >  2:437708/1‑150 (MQ=255)                                                                                               tttCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa                                                                                           >  2:1380247/1‑107 (MQ=255)                                                                                               tttCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa                                                                                           <  1:1380247/107‑1 (MQ=255)                                                                                                 tCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGc                                              >  1:303549/1‑150 (MQ=255)                                                                                                     aTGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGActc                                                                                                   <  2:1275494/93‑1 (MQ=255)                                                                                                     aTGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGActc                                                                                                   >  1:1275494/1‑93 (MQ=255)                                                                                                     aTGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGa                                          <  2:905096/150‑1 (MQ=255)                                                                                                        tggtgCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAg                                                                                          <  2:499922/99‑1 (MQ=255)                                                                                                        tggtgCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAg                                                                                          >  1:499922/1‑99 (MQ=255)                                                                                                          gtgCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa                                            <  2:834188/143‑1 (MQ=255)                                                                                                          gtgCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa                                            >  1:834188/1‑143 (MQ=255)                                                                                                           cgtaatacctgtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGccc                                    <  1:961895‑M2/108‑1 (MQ=255)                                                                                                            gCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGa                                          <  2:1640013/143‑1 (MQ=255)                                                                                                            gCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGa                                          >  1:1640013/1‑143 (MQ=255)                                                                                                              aGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTg                                 <  2:1152610/150‑1 (MQ=255)                                                                                                                     gtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATg                                                                                                       <  1:786990‑M2/41‑1 (MQ=255)                                                                                                                     gtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATg                                                                                                       >  2:786990‑M2/33‑73 (MQ=255)                                                                                                                     gtaggagcgggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGGCCGTGGTTGCGa                          <  2:887281‑M2/118‑1 (MQ=255)                                                                                                                             gggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTgg                  >  1:541365‑M2/25‑150 (MQ=255)                                                                                                                             gggtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTgg                  <  1:305021‑M2/126‑1 (MQ=255)                                                                                                                               gtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCttt                                                                                                          <  1:1037113‑M2/38‑1 (MQ=255)                                                                                                                               gtttacccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCttt                                                                                                          >  2:1037113‑M2/23‑60 (MQ=255)                                                                                                                                   acccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCgg            <  2:303549‑M2/132‑1 (MQ=255)                                                                                                                                     ccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGc          >  2:1608505‑M2/17‑150 (MQ=255)                                                                                                                                     ccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGc          >  2:1374019‑M2/17‑150 (MQ=255)                                                                                                                                     ccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTCTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc                                                                          >  1:551911‑M2/17‑86 (MQ=255)                                                                                                                                     ccgcgaaagggccggcGCAGTTTGTAGAGATGCATCATTTTCTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc                                                                          <  2:551911‑M2/70‑1 (MQ=255)                                                                                                                                          aaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGa                          <  1:1431698‑M2/118‑1 (MQ=255)                                                                                                                                          aaagggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGa                          >  2:1431698‑M2/12‑129 (MQ=255)                                                                                                                                            agggccggcGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTGCATcc   <  1:318623‑M2/141‑1 (MQ=255)                                                                                                                                             gggCCGGCGAAGATTGGAGAAGGTCATGATTGTTTCGACGGGGTTGAGGACTCTGGTGCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGCGGTTGCGAGTACGTGGCGGCGGGCTGCATCCg  >  2:919589/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                              GGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGGTTGCGAGTACGTGGCGTCGGGCTGCATCCG  >  NC_002947/1392837‑1393125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.