New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1844179	63 (1.050)	6 (0.100)	6/232	NT	8.1%	coding (657/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2177745 =	76 (1.310)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein

TCGGTGTCACCACAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAACCCA  >  NC_002947/2177601‑2177894                                                                                                                                                 |                                                                                                                                                       tCGGTGTCACCACAGGTAGCTCACCCCCACGGACGACAGTGAGTTCGTTCTCAAGTGTGCCAGGAACGAATCCTGCGCCCCCCGAAAGATGTCGAACTGCATCGACCTCGTTTTCGTAGACACGTCGAACGACTACAAAGGGTCCAGACt                                                                                                                                                   >  2:218489/1‑150 (MQ=255)   ggTGTCACCACAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACtgt                                                                                                                                                 <  2:283021/150‑1 (MQ=255)     tgtCACCACAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACtgtgt                                                                                                                                               <  2:849827/150‑1 (MQ=255)       tCACCACAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑a                                                                                                                                            >  2:444948/1‑150 (MQ=255)         accacAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCa                                                                                                                                                       <  2:418256/138‑1 (MQ=255)         accacAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCa                                                                                                                                                       >  1:418256/1‑138 (MQ=255)         accacAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑aaa                                                                                                                                          >  2:1109577/1‑150 (MQ=255)          ccacAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑aaaa                                                                                                                                         >  2:553026/1‑150 (MQ=255)                     tCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGtt                                                                                                                              <  1:584329/150‑1 (MQ=255)                      cGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTg                                                                                                                             >  1:268752/1‑150 (MQ=255)                       gCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACTAGTCCTGCGCCCCCCGAAAGATGTCGACTGGTATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGt                                                                                                                            <  1:1433242/150‑1 (MQ=255)                         cgccACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCt                                                                                                                          >  1:1546819/3‑150 (MQ=255)                         cTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACtgtg                                                                                                                                                >  1:1098451/1‑129 (MQ=255)                         cTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACtgtg                                                                                                                                                <  2:1098451/129‑1 (MQ=255)                         cTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCt                                                                                                                          >  1:279579/1‑150 (MQ=255)                            cACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAAc                                                                                                                       <  1:553026/150‑1 (MQ=255)                            cACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAAc                                                                                                                       <  2:268752/150‑1 (MQ=255)                            cACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAAc                                                                                                                       <  1:890795/150‑1 (MQ=255)                                cttcggtggcctggtcgatgctgtgttgcagttcttcgtgggcattctgcagggtttcggccatgcggttgatgccgtgggccagttcgtccagctcatggctgcccatggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTc                                                                                                                   >  2:1331667‑M2/114‑150 (MQ=255)                                      aGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGGCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGgtcg                                                                                                             >  1:1281689/1‑150 (MQ=255)                                        tGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGgtcgtc                                                                                                           <  2:319308/150‑1 (MQ=255)                                            ttcgttcTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGa                                                                                                       >  2:1000729/1‑150 (MQ=255)                                             tcgttcTCAGGTGGCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTGGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTA‑AAAACGCCCGCGGTTGTCTAACCTTCTGgccgccccaac                                                                                                      >  1:683365/1‑143 (MQ=255)                                                  ctcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACCCCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTgg                                                                                                 >  1:522906/1‑150 (MQ=255)                                                   tcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGtt                                                                                                                              <  1:188136/120‑1 (MQ=255)                                                   tcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGtt                                                                                                                              >  2:188136/1‑120 (MQ=255)                                                   tcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTggg                                                                                                <  2:522906/150‑1 (MQ=255)                                                   tcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTg                                                                                                  >  2:126578/1‑148 (MQ=255)                                                   tcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTg                                                                                                  <  1:126578/148‑1 (MQ=255)                                                   tcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCCCACGGCTGCAAAGGGTCCAGA‑TGATTGTTAAACTCTCGGGGTTGTCTAACCTTCTGGTCGTCGTGACCGTggg                                                                                                <  1:444948/150‑1 (MQ=255)                                                     tgtgttgcagttcttcgtgggcattctgcagggtttcggccatgcggttgatgccgtgggccagttcgtccagctcatggctgcccatggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGa                                                                                              >  2:1439148‑M2/93‑150 (MQ=255)                                                     aGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGa                                                                                              >  1:379532/1‑150 (MQ=255)                                                        gttgcagttcttcgtgggcattctgcagggtttcggccatgcggttgatgccgtgggccagttcgtccagctcatggctgcccatggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACaa                                                                                           <  1:1331667‑M2/61‑1 (MQ=255)                                                            ccAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCAt                                                                                       <  1:1000729/150‑1 (MQ=255)                                                            ccAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCAt                                                                                       >  1:211288/1‑150 (MQ=255)                                                            acggtaaCGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCAt                                                                                       >  2:1298103/6‑150 (MQ=255)                                                             cAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGa                                                                                              <  1:492354/142‑1 (MQ=255)                                                             cAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGa                                                                                              >  2:492354/1‑142 (MQ=255)                                                             cAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGACCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATg                                                                                      <  1:771147/150‑1 (MQ=255)                                                                   cGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGa                                                                                >  1:671918/1‑150 (MQ=255)                                                                      gTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTc                                                                             >  2:1060456/1‑150 (MQ=255)                                                                       tCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCa                                                                            <  2:211288/150‑1 (MQ=255)                                                                         cTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACCCCTCGAACGGCTGCAAAGGGTCCAGACGGTGTG‑CACACGCCCGCGGTTGTCTAACCTTCTGGGCGCAGCGACCGCGGGGACAATCATGAGACGATACATc                                                                          >  2:1200308/1‑150 (MQ=255)                                                                         cTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGATGCGATTCATc                                                                          >  2:1629398/1‑150 (MQ=255)                                                                            cgcCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGaa                                                                       <  2:671918/150‑1 (MQ=255)                                                                             gcCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAg                                                                      <  1:1298103/150‑1 (MQ=255)                                                                                 cccGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTgg                                                                                                 <  2:151306/119‑1 (MQ=255)                                                                                 cccGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTgg                                                                                                 >  1:151306/1‑119 (MQ=255)                                                                                 cccGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGa                                                                  <  1:90606/150‑1 (MQ=255)                                                                                 cccGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGa                                                                  >  1:1372792/1‑150 (MQ=255)                                                                                    gAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGc                                                               <  2:1281689/150‑1 (MQ=255)                                                                                          tGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAAc                                                         >  1:1576121/1‑150 (MQ=255)                                                                                              gAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAg                                                     <  1:908226/150‑1 (MQ=255)                                                                                                         acgtCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgct                                          >  1:315825/4‑150 (MQ=255)                                                                                                         aCCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCa                                                      <  2:902624/138‑1 (MQ=255)                                                                                                         aCCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCa                                                      >  1:902624/1‑138 (MQ=255)                                                                                                         aCCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgct                                          <  2:279579/150‑1 (MQ=255)                                                                                                         aCCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgct                                          >  2:1418656/1‑150 (MQ=255)                                                                                                         aCCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgct                                          >  2:1556677/1‑150 (MQ=255)                                                                                                          ccTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTg                                                                                                  >  2:117401/1‑93 (MQ=255)                                                                                                          ccTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTg                                                                                                  <  1:117401/93‑1 (MQ=255)                                                                                                           cTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgctgc                                        >  2:1588246/1‑150 (MQ=255)                                                                                                            tCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGcc                                       >  2:252444/1‑150 (MQ=255)                                                                                                            tCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCGTCTGGTcgtcgt                                                                                                         >  1:477118/1‑84 (MQ=255)                                                                                                            tCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCGTCTGGTcgtcgt                                                                                                         <  2:477118/84‑1 (MQ=255)                                                                                                                 ccagttcgtccagctcatggctgcccatggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGa                                                                  <  1:433767‑M2/86‑1 (MQ=255)                                                                                                                 ccagttcgtccagctcatggctgcccatggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGa                                                                  >  2:433767‑M2/33‑118 (MQ=255)                                                                                                                    gTAGACACCTCGAACGGCTGCAAAGGGTACAGACTGTGTG‑ACACCGCGGCAGGGTGCCTAAGCTTCTGGGCGGCGGGACCGTGGGGACAATCGTGAAGCGATGCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGcc                               >  1:850043/1‑150 (MQ=255)                                                                                                                     tAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGATGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCt                              <  1:1629398/150‑1 (MQ=255)                                                                                                                       gACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCTTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTCCCGGAGAGCCTgg                            >  1:1601014/1‑150 (MQ=255)                                                                                                                         tccagctcatggctgcccatggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGgac                          <  1:1439148‑M2/126‑1 (MQ=255)                                                                                                                            cTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTTGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAAAGCAGGTTACATTGCTGCCGGAGGGCCTGgacgac                       >  1:163366/1‑150 (MQ=255)                                                                                                                            cTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTc                                                             >  2:1623922/1‑112 (MQ=255)                                                                                                                            cTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTc                                                             <  1:1403615/112‑1 (MQ=255)                                                                                                                            cTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTc                                                             >  2:1403615/1‑112 (MQ=255)                                                                                                                            cTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTc                                                             <  1:1623922/112‑1 (MQ=255)                                                                                                                             tCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACt                      >  2:916538/1‑150 (MQ=255)                                                                                                                              cGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTa                     <  2:850043/150‑1 (MQ=255)                                                                                                                               gAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGgtcgtc                                                                                                           >  1:706806/1‑63 (MQ=255)                                                                                                                               gAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGgtcgtc                                                                                                           <  2:706806/63‑1 (MQ=255)                                                                                                                               gAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTAc                    <  2:1546819/150‑1 (MQ=255)                                                                                                                                     cTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTgg                                                                                                 <  2:10315/67‑1 (MQ=255)                                                                                                                                     cTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTgg                                                                                                 >  1:10315/1‑67 (MQ=255)                                                                                                                                       gCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGa            <  1:1109577/150‑1 (MQ=255)                                                                                                                                        cAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGAt                                                                               <  1:87269/82‑1 (MQ=255)                                                                                                                                        cAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGAt                                                                               >  2:87269/1‑82 (MQ=255)                                                                                                                                           atggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGaa        <  1:1007833‑M2/144‑1 (MQ=255)                                                                                                                                            gggTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATc                                                                                         <  2:1259450/68‑1 (MQ=255)                                                                                                                                            gggTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATc                                                                                         >  1:1259450/1‑68 (MQ=255)                                                                                                                                             ggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGaaaa      <  1:218489‑M2/146‑1 (MQ=255)                                                                                                                                             ggtcCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGaaaa      <  1:1556677‑M2/146‑1 (MQ=255)                                                                                                                                                 cAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAACCCa  <  1:252444/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                       TCGGTGTCACCACAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTG‑AAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAACCCA  >  NC_002947/2177601‑2177894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.