New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3003037 =	54 (0.900)	6 (0.110)	6/228	NT	10.7%	coding (1035/1464 nt)	PP_2626	hypothetical protein
	?	NC_002947	3003077 =	49 (0.860)					coding (1075/1464 nt)	PP_2626	hypothetical protein

CCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGGAAACCGGTGGCATAGAGCCGCTGCTCCTTCGGC  >  NC_002947/3002930‑3003224                                                                                                                                                    |                                                                                                                                                    cccTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACATCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTa                                                                                                                                                   >  1:768984/1‑150 (MQ=255)  ccTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACATCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAt                                                                                                                                                  <  2:768984/150‑1 (MQ=255)  ccTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAt                                                                                                                                                  >  1:383740/1‑150 (MQ=255)       tGGATTCGTGGCAGCTTTCTGGCTGCGATCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTc                                                                                                                                             >  2:1525703/1‑150 (MQ=255)       tGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTc                                                                                                                                             >  2:599121/1‑150 (MQ=255)           ttCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTcgacg                                                                                                                                         >  1:403837/1‑150 (MQ=255)               tGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCa                                                                                                                                     >  2:1630213/1‑150 (MQ=255)                 gCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGt                                                                                                                                   >  2:1071024/1‑150 (MQ=255)                          tGGCTGCGATCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTgcctggcct                                                                                                                          <  1:1525703/150‑1 (MQ=255)                            gCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCTACGACCAGTGcctcggctgg                                                                                                                        >  2:264251/1‑150 (MQ=255)                             cTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCctggcctggc                                                                                                                       <  1:686601/150‑1 (MQ=255)                                          cacacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAttt                                                                                                                                                <  2:1533842/112‑1 (MQ=255)                                          cacacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAttt                                                                                                                                                >  1:1533842/1‑112 (MQ=255)                                           acacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCaa                                                                                                         <  2:383740/150‑1 (MQ=255)                                              caGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAggg                                                                                                      <  1:599121/150‑1 (MQ=255)                                                          tgCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCaa                                                                                          <  2:697879/150‑1 (MQ=255)                                                             gAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGt                                                                                       <  2:189574/150‑1 (MQ=255)                                                             gAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGt                                                                                       <  1:1630213/150‑1 (MQ=255)                                                               ggTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGc                                                                                     <  1:1234585/150‑1 (MQ=255)                                                                 tGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCaa                                                                                   <  2:403837/150‑1 (MQ=255)                                                                  ggCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCAACCAAGGGCCGTCTGGCCAAGGTGCAAc                                                                                  >  1:415464/1‑150 (MQ=255)                                                                   gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTcgac                                                                                                                                          >  2:1580130/1‑93 (MQ=255)                                                                   gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTcgac                                                                                                                                          <  1:1580130/93‑1 (MQ=255)                                                                   gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAg                                                                                                                  <  2:556984/117‑1 (MQ=255)                                                                   gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAg                                                                                                                  >  1:556984/1‑117 (MQ=255)                                                                     cGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCTTGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAAcccc                                                                               >  2:411379/1‑150 (MQ=255)                                                                            aTCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAg                                                                        >  1:829891/1‑150 (MQ=255)                                                                               cGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGc                                                                                             >  1:726847/1‑126 (MQ=255)                                                                               cGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGc                                                                                             <  2:726847/126‑1 (MQ=255)                                                                                 ttGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                                                                         <  1:304412/128‑1 (MQ=255)                                                                                 ttGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                                                                         >  2:304412/1‑128 (MQ=255)                                                                                     gCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCaa                                                                                   <  2:401357/130‑1 (MQ=255)                                                                                     gCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCaa                                                                                   >  1:401357/1‑130 (MQ=255)                                                                                      ccACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCACGCACGCCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGcc                                                              >  1:1334134/1‑150 (MQ=255)                                                                                        aCCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGcctggcctgg                                                                                                                        <  1:628297/90‑1 (MQ=255)                                                                                        aCCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGcctggcctgg                                                                                                                        >  2:628297/1‑90 (MQ=255)                                                                                                gTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCgagga                                                    <  2:829891/150‑1 (MQ=255)                                                                                                gTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCAGCCTGCGCgag                                                      <  2:1099943/148‑1 (MQ=255)                                                                                                gTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCAGCCTGCGCgag                                                      >  1:1099943/1‑148 (MQ=255)                                                                                                    gTACAGCGCATGCCCTCGCTGCAGCAGTCTTGTTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCtt                                                <  1:902/150‑1 (MQ=255)                                                                                                     tACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTg                                               >  2:342172/1‑150 (MQ=255)                                                                                                      aCAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                                                                         <  1:882532/107‑1 (MQ=255)                                                                                                      aCAGCGCATGCCCGCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                                                                         >  2:882532/1‑107 (MQ=255)                                                                                                            catgccgtcgctgaagcacagctgctgcagcgagggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCa                                                                                                              <  2:1284329‑M2/40‑1 (MQ=255)                                                                                                            catgccgtcgctgaagcacagctgctgcagcgagggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCa                                                                                                              >  1:1284329‑M2/41‑80 (MQ=255)                                                                                                                 cgtcgctgaagcacagctgctgcagcgagggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGcc                                                                                                    >  2:113449‑M2/36‑85 (MQ=255)                                                                                                                 cgtcgctgaagcacagctgctgcagcgagggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGcc                                                                                                    <  1:113449‑M2/50‑1 (MQ=255)                                                                                                                  cTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGGa                                  >  1:1079435/1‑150 (MQ=255)                                                                                                                   tCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCg                                                                 <  2:1410301/118‑1 (MQ=255)                                                                                                                   tCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCg                                                                 >  1:1410301/1‑118 (MQ=255)                                                                                                                   tCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGATAAGCGGCCTTCACGAGTTTCTCGTcagccagatcgga                                 >  2:1250686/1‑144 (MQ=37)                                                                                                                      ctgaagcacagctgctgcagcgacggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCg                                                                 <  2:291575‑M2/85‑1 (MQ=255)                                                                                                                      ctgaagcacagctgctgcagcgacggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCg                                                                 >  1:291575‑M2/31‑115 (MQ=255)                                                                                                                               cTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCgag                                                      >  2:255723/1‑117 (MQ=255)                                                                                                                               cTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCgag                                                      <  1:255723/117‑1 (MQ=255)                                                                                                                                     ttCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGGGGAGCTTGTCAGCCAGCTGGAAACCGGTGGCATAGAGCCg               <  1:1071024/150‑1 (MQ=255)                                                                                                                                        aGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCtt                                                >  2:356641/1‑114 (MQ=255)                                                                                                                                        aGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCtt                                                <  1:356641/114‑1 (MQ=255)                                                                                                                                                  tgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGGAAACCGGTGGCATAGAGCCGCTGCTCCTTCGGc  >  2:1248190‑M2/3‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGGAAACCGGTGGCATAGAGCCGCTGCTCCTTCGGC  >  NC_002947/3002930‑3003224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.