New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4890813 | 42 (0.700) | 4 (0.070) | 4/222 | NT | 8.9% | intergenic (+168/‑71) | glxR/ttuD | 2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase |
? | NC_002947 | = 4890835 | 43 (0.780) | intergenic (+190/‑49) | glxR/ttuD | 2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase |
CTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGTCCTCGAACCCTACCTGCCCGCCGAT > NC_002947/4890689‑4890982 | cTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTcca > 2:1385511‑M2/1‑147 (MQ=255) tACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGGTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccag > 2:943695‑M2/1‑146 (MQ=255) gACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGtt < 1:915915/150‑1 (MQ=255) cacaATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGa > 1:1341510/1‑150 (MQ=255) acaATCGCTCAGAGATGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggc < 1:1095637‑M2/141‑9 (MQ=255) acaATCGCTCAGAGATGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggc > 2:1095637‑M2/1‑133 (MQ=255) tCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCACCAACGTGGCATCGAGCAACGCCGGTCGTTCGGTCGAGCTCGTCGGAGTCAGTTCCAGGGGCGTTTTTGATTCTg < 1:284000/150‑1 (MQ=255) tCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGa > 1:184154/1‑150 (MQ=255) cAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGaa < 2:1341510/150‑1 (MQ=255) tgtgCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCa > 1:598346/1‑141 (MQ=255) tgtgCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCa < 2:598346/141‑1 (MQ=255) cATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACaataat > 1:524543/1‑150 (MQ=255) ggAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAg > 1:1607715/1‑150 (MQ=255) gggCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGc < 2:374948/150‑1 (MQ=255) ttGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATg > 1:1402501/1‑150 (MQ=255) tGCCCGCGAAGAAGCCAACGCCGTTGAGCCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATgt < 2:1082805/150‑1 (MQ=255) tGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATgt < 2:1402501/150‑1 (MQ=255) ccGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATgtcgg > 2:606553/1‑150 (MQ=255) cgcgAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATgtcggt > 1:1353196/1‑150 (MQ=255) aagaagCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGc > 1:1398194/1‑112 (MQ=255) aagaagCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGc < 2:1398194/112‑1 (MQ=255) cAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGc > 1:1129889/1‑126 (MQ=255) cAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGc < 2:1129889/126‑1 (MQ=255) aaCGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCaaaa > 2:84160/1‑150 (MQ=255) aCGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCaaaaa < 2:524543/150‑1 (MQ=255) gCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACGACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACt > 1:146110/1‑150 (MQ=255) cTGCGACCACAGGCCCAATCGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGaa < 1:84160/150‑1 (MQ=255) acaGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGa < 2:1607715/150‑1 (MQ=255) aGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGaca > 1:294096/1‑150 (MQ=255) gCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGaacaa < 1:1421277/86‑1 (MQ=255) gCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGaacaa > 2:1421277/1‑86 (MQ=255) cccAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAg < 2:184154/150‑1 (MQ=255) tggtggCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATc < 1:1189733/150‑1 (MQ=255) gCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgtt < 2:1470014‑M2/106‑61 (MQ=255) gCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgtt > 1:1470014‑M2/1‑46 (MQ=255) atagAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATcgccgccg > 1:477122/4‑150 (MQ=255) aTCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTg < 1:1437928/90‑1 (MQ=255) aTCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTg > 2:1437928/1‑90 (MQ=255) cacCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAAATCCGAGGCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCAccccc > 1:367240/1‑150 (MQ=255) acCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctcctacatgcacagctctgagcgattgtgcggt < 1:331209‑M2/150‑117 (MQ=255) ccGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAGCAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTc > 1:1129160/1‑150 (MQ=255) gCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCaa > 1:1079857/1‑150 (MQ=255) cccTGGTTCGGCCTGCACGGAGGCAGTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctcctacatgcacagctctgagcgattgtgcggtctttgg < 1:1473415‑M2/150‑123 (MQ=255) cccTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGt < 1:218225/150‑1 (MQ=255) ccTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAg > 2:1376222/1‑148 (MQ=255) ccTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAg < 1:1376222/148‑1 (MQ=255) cTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGTCCTCGAACCCTa > 2:1423323/1‑150 (MQ=255) gCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGTCCTCGAACCCTAcc < 1:496644/150‑1 (MQ=255) aCGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATc > 2:1551253/1‑73 (MQ=255) aCGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATc < 1:1551253/73‑1 (MQ=255) aCGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGt < 2:1540115/134‑1 (MQ=255) aCGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGt > 1:1540115/1‑134 (MQ=255) ggTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGTCCTCGAACCCTACCTGCCCGCCGa > 2:234045/2‑150 (MQ=255) gTTccaggggcgggtgttgctcgatgccaccattgggcctgtggtcgcaggttcaacggcgttggcttcttcgcgggcaagcccgctcctacatgcacagctctgagcgattgtgcggtctttggtaggagcgggtttacccgcgaagag > 2:331209‑M2/1‑3 (MQ=255) | CTACCAAAGACCGCACAATCGCTCAGAGCTGTGCATGTAGGAGCGGGCTTGCCCGCGAAGAAGCCAACGCCGTTGAACCTGCGACCACAGGCCCAATGGTGGCATCGAGCAACACCCGCCCCTGGTTCGGCCTGCACGGAGGCAGTTCCAGGGGCGTTTTTGATTCTGCAGAACAACAATAATTGGGAGCCTGCCATGTCGGTCGATCCGCAAAAACTTCTCCGCGAACTGTTCGACACAGCCATCGCCGCCGCCCACCCCCGTCAAGTCCTCGAACCCTACCTGCCCGCCGAT > NC_002947/4890689‑4890982 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |