New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5816900 =	51 (0.850)	14 (0.250)	10/222	NT	24.7%	intergenic (+30/+99)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816983 =	38 (0.690)					intergenic (+113/+16)	PP_5092/pilT	NLP/P60 protein/twitching motility protein

GCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAC  >  NC_002947/5816834‑5817129                                                                                                                                                      |                                                                                                                                                   gcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                                    >  1:1467240/1‑150 (MQ=255)    gAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAggg                                                                                                                                                 >  1:803615/1‑150 (MQ=255)    gAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCAAGCCCGATCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAggg                                                                                                                                                 >  2:545636/1‑150 (MQ=255)          gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTg                                                                                                                                           >  2:1415074/1‑150 (MQ=255)          gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCCCGGGCCCGCCCGCTCCCACCCCGAGCGCGCCGCCCTCACCCGCCGCTCCCACCCCCGTGGGCACGAGGACGCCCGCGAACggcactatg                                                                                                                                           >  2:1582939/1‑143 (MQ=255)             gcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                                        <  1:1284950/150‑1 (MQ=255)             gcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                                        >  1:1187754/1‑150 (MQ=255)              cagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAgg                                                                                                                                       <  2:153657/150‑1 (MQ=255)               agcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGt                                                                                                                                      <  2:1187754/150‑1 (MQ=255)                           ccAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCtt                                                                                                                          <  1:1415074/150‑1 (MQ=255)                           ccAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCtt                                                                                                                          <  2:360220/150‑1 (MQ=255)                            cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCGCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCttt                                                                                                                         <  1:276792/150‑1 (MQ=255)                             aaGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                                                  <  2:1173740/124‑1 (MQ=255)                             aaGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                                                  >  1:1173740/1‑124 (MQ=255)                                    aaGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAcc                                                                                                                 <  2:803615/150‑1 (MQ=255)                                       cTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTc                                                                                                              <  2:1467240/150‑1 (MQ=255)                                         gATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGc                                                                                                            <  1:545636/150‑1 (MQ=255)                                                  tATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCTCGCGAAAGGGCCTTTGCAGGTACGACAAGCCTTGGATCAACCCTCGCTCCCTCAGc                                                                                                   >  2:514866/1‑150 (MQ=255)                                                           ccGGCCCCTTCGCGGGCACGCCCGCTCCCCCAGGTAGCGCGTCGCTCCAGCGCGCAGCCCACACACCCGTGGGAGCGGGCGCGCCCACGAAAGGGCCTTTGCAGGTACCACAAGCCTTTGATCCACCCTCGCCCCCTCAGCCCCCGCAAc                                                                                          >  2:137602/1‑150 (MQ=255)                                                                         GGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGt                                                                            <  1:917874‑M1/150‑1 (MQ=255)                                                                               cccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTc                                                                                                      >  2:1296741/1‑118 (MQ=255)                                                                               cccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTc                                                                                                      <  1:1296741/118‑1 (MQ=255)                                                                               cccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATc                                                                              <  2:239080/142‑1 (MQ=255)                                                                               cccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATc                                                                              >  1:239080/1‑142 (MQ=255)                                                                                  gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATccc                                                                   >  1:1330190/1‑150 (MQ=255)                                                                                   ctcccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCACCCTCCATCGTCAGCATcccc                                                                  >  1:84254‑M2/68‑150 (MQ=255)                                                                                    tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCt                                                                 >  2:828720/1‑150 (MQ=255)                                                                                      ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTc                                                                                                      <  1:288097‑M2/47‑1 (MQ=255)                                                                                      ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTc                                                                                                      >  2:288097‑M2/65‑111 (MQ=255)                                                                                      ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                               >  1:634275‑M2/65‑150 (MQ=255)                                                                                      ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                               >  1:256153‑M2/65‑150 (MQ=255)                                                                                      ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAgg                                                                                                                                                  >  2:671097‑M2/65‑67 (MQ=255)                                                                                      ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAgg                                                                                                                                                  <  1:671097‑M2/3‑1 (MQ=255)                                                                                      ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                               >  1:1401499/1‑150 (MQ=255)                                                                                       cacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCAccg                                                              >  1:561681‑M2/64‑150 (MQ=255)                                                                                       cacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACaa                                                                                                                               >  1:718672‑M2/64‑85 (MQ=255)                                                                                       cacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACaa                                                                                                                               <  2:718672‑M2/22‑1 (MQ=255)                                                                                            gtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCgccgcc                                                         >  2:1254116‑M2/59‑150 (MQ=255)                                                                                              aGCGCGTCGCTCTCGCGCGTAGCGCACATACGTGTGGGGGCGGGCGCGGCCGCGAAAGGGCCTTTGCATGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGccgcccc                                                       <  2:1173817/150‑1 (MQ=255)                                                                                                gtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTcc                                                                                                         >  2:92708‑M2/55‑98 (MQ=255)                                                                                                gtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTcc                                                                                                         <  1:92708‑M2/44‑1 (MQ=255)                                                                                                   gTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCTCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                                  >  2:1501567/1‑150 (MQ=255)                                                                                                   gTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                                  <  1:542111/150‑1 (MQ=255)                                                                                                   gTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                                  <  1:1501567/150‑1 (MQ=255)                                                                                                   agctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                                  <  2:634275‑M2/99‑1 (MQ=255)                                                                                                    tCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCCACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTg                                                 >  2:296177/1‑150 (MQ=255)                                                                                                        tctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGccg                                                                                                                                              >  1:385481/1‑52 (MQ=255)                                                                                                        tctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGccg                                                                                                                                              <  2:385481/53‑2 (MQ=255)                                                                                                          tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                     <  2:1284106/92‑1 (MQ=255)                                                                                                          tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                     >  1:1284106/1‑92 (MQ=255)                                                                                                          tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGAGCCTTTGCAGGGACTCCAAGCCTTGGATCAACCCTCGGTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCGCCATccc                                           >  2:1629224/1‑148 (MQ=255)                                                                                                              agagcgacgcgctacctgtgggagcgggcgtgcccgcgaaGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                                       <  2:84254‑M2/110‑1 (MQ=255)                                                                                                              agagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                                       <  2:256153‑M2/110‑1 (MQ=255)                                                                                                                gcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGTATGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGa                                     <  1:514866/150‑1 (MQ=255)                                                                                                                     tCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTc                                                                                                <  1:845738/86‑1 (MQ=255)                                                                                                                     tCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTc                                                                                                >  2:845738/1‑86 (MQ=255)                                                                                                                      cacaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTg                               <  2:1330190/150‑1 (MQ=255)                                                                                                                       acaTACCTGTGGGAGCGGGCGCGCTCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCTCGCCCTGCATCACTGAAGACAACTgc                              >  2:1090955/1‑150 (MQ=255)                                                                                                                       acaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                          >  1:387113/1‑42 (MQ=255)                                                                                                                       acaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                          <  2:387113/42‑1 (MQ=255)                                                                                                                              tgtgGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCCACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGACCCGAATTACATAAGACAAGCGCGCCCAcc                       >  1:1067715/1‑150 (MQ=255)                                                                                                                                           gcgcCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAAc          <  2:938978/150‑1 (MQ=255)                                                                                                                                             gcccgcgaaAGGGCCTTTGCAGGTACTACCAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCa        <  1:617312‑M2/141‑1 (MQ=255)                                                                                                                                              cccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCGCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAg       >  1:1439342‑M2/9‑150 (MQ=255)                                                                                                                                              cccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAg       <  1:1254116‑M2/142‑1 (MQ=255)                                                                                                                                               ccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAgg      <  2:1401499‑M2/143‑1 (MQ=255)                                                                                                                                                   gaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGc                                                <  2:350118‑M2/101‑1 (MQ=255)                                                                                                                                                   gaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGc                                                >  1:350118‑M2/4‑104 (MQ=255)                                                                                                                                                   gaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAc  >  1:1047453‑M2/4‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAC  >  NC_002947/5816834‑5817129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.