Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 466,450 | G→T | 6.3% | G150V (GGC→GTC) | PP_0385 → | serine acetyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 466,450 | 0 | G | T | 6.3% | 202.1 / 3.4 | 63 | G150V (GGC→GTC) | PP_0385 | serine acetyltransferase |
Reads supporting (aligned to +/- strand): ref base G (28/31); new base T (2/2); total (30/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01 |
TACGTCAGCATCGGGCGCAACTTCTTCATCCGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTGGCAGAGGGGATGG > NC_002947/466302‑466596 | tACGTCAGCATCGGGCGCAACTTCTTCATCCGGCAGAACTGCTCGATCGGCATCAAGTCCCTGGGGTTGCAGGAGTACGCACTGTGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGc < 2:300267/150‑1 (MQ=255) gTCAGCATCGGGCGCAACTTCTTCATCCGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGAt < 2:531650/150‑1 (MQ=255) gcAACTTCTTCATCCGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCg < 2:158313/150‑1 (MQ=255) aaCTTCTTCATCCGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGgc > 2:225499/1‑150 (MQ=255) cttcATCCGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGAt > 1:654179/1‑150 (MQ=255) cttcATCCGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGAGATCGGCGCGAt < 2:1126119/150‑1 (MQ=255) ccGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGtt < 2:788840/150‑1 (MQ=255) cGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTg < 2:646942/150‑1 (MQ=255) cGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTg > 2:971838/1‑150 (MQ=255) ggCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGtt > 1:1443881/1‑148 (MQ=255) ggCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGtt < 2:1443881/148‑1 (MQ=255) ggAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAg < 1:1332831/125‑1 (MQ=255) ggAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAg > 2:1332831/2‑126 (MQ=255) cTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTCGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTAcgcg < 1:1567883/150‑1 (MQ=255) gCTCGATCGGCATCAAGCCCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCggg < 1:563467/150‑1 (MQ=255) gCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGa > 1:695340/1‑112 (MQ=255) gCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGa < 2:695340/112‑1 (MQ=255) cTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGa > 1:95971/1‑150 (MQ=255) gATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGatat > 1:712797/1‑150 (MQ=255) gCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGc > 1:1083912/1‑150 (MQ=255) cAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTgg > 1:226468/1‑150 (MQ=255) gggTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTc < 2:1083912/150‑1 (MQ=255) aGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAAcc < 1:971838/150‑1 (MQ=255) gCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGa < 2:524911/94‑1 (MQ=255) gCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGa > 1:524911/1‑94 (MQ=255) gCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAg > 1:282045/1‑150 (MQ=255) aCTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGtt < 1:566197/99‑1 (MQ=255) aCTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGtt > 2:566197/1‑99 (MQ=255) aCTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGc < 2:75405/119‑1 (MQ=255) aCTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGc > 1:75405/1‑119 (MQ=255) cTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTc < 2:654179/150‑1 (MQ=255) cgcATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCgag > 1:1163703/1‑150 (MQ=255) gcATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCgaga < 1:225499/150‑1 (MQ=255) gcATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCgaga < 2:1601998/150‑1 (MQ=255) gcATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCgaga > 1:586249/1‑150 (MQ=255) gTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTg > 2:659441/1‑89 (MQ=255) gTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTg < 1:659441/89‑1 (MQ=255) gACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATGTTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCg < 2:83388/150‑1 (MQ=255) aaCGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGCCAATGTCGATgc < 2:777009/59‑2 (MQ=37) aaCGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGCCAATGTCGATgc < 2:1602164/59‑2 (MQ=37) aaCGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGCCAATGTCGATgc > 1:1602164/1‑58 (MQ=255) aaCGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGCCAATGTCGATgc > 1:777009/1‑58 (MQ=255) aCGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAg < 2:95971/150‑1 (MQ=255) cGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAgg < 2:282045/150‑1 (MQ=255) cATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTgg > 2:698192/1‑77 (MQ=255) cATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTgg < 1:698192/77‑1 (MQ=255) cATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGAGTTCGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTa > 2:1050454/1‑150 (MQ=255) tGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAAc < 2:586249/150‑1 (MQ=255) gcgcCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCaa > 2:1498084/1‑150 (MQ=255) cAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTgg < 1:155322/68‑1 (MQ=255) cAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTgg > 2:155322/1‑68 (MQ=255) gCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGa > 2:31335/1‑70 (MQ=255) gCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGa < 1:31335/70‑1 (MQ=255) tGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGCTACATTTGCGGACGtt > 2:1109789/1‑150 (MQ=255) gATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGc < 2:1228698/142‑1 (MQ=255) gATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGc > 1:1228698/1‑142 (MQ=255) aTCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTgg < 1:97580/150‑1 (MQ=255) tCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTGGc < 2:712797/150‑1 (MQ=255) gCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTGGCag > 1:369398/1‑150 (MQ=255) cATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTGGCaga > 1:1029537/1‑150 (MQ=255) aTCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTGGCagag > 2:986415/1‑150 (MQ=255) aCATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTATATTTGCGGACGTTGGCAGAGGGGa < 1:1498084/150‑1 (MQ=255) ttGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCAACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTGGCAGAGGGGAtgg > 1:521864/1‑150 (MQ=255) gCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAgggg < 1:1343087/102‑1 (MQ=255) gCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAgggg > 2:1343087/1‑102 (MQ=255) gCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCg < 1:817155/116‑1 (MQ=255) gCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCg > 2:817155/1‑116 (MQ=255) | TACGTCAGCATCGGGCGCAACTTCTTCATCCGGCAGAACTGCTCGATCGGCATCAAGACCCTGGGGTTGCAGGAGTACGCACTGCGCATTGGTGACAACGTGAGCATGGGCGCCAACAGTTGCATCGTTGCTGATCGCATCGACATTGGCGATGACGTAGTGATCGGCGCGATGTCGTTGGTTACGCGGGATATTCCGCCTGGCATGACCTTCTACAACCCACGGCAGGTCGAGATGCGTCCGGGAGGGGATTAACCAACAGCGGTACATTTGCGGACGTTGGCAGAGGGGATGG > NC_002947/466302‑466596 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |